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Report for CCDS56132.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56132.1 Public Homo sapiens 2 BCL2L11 24 110 108 CCDS HistoryNCBI Gene:10018Re-query CCDS DB by CCDS ID:56132.1Re-query CCDS DB by GeneID:10018See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)


Attributes
Nonsense-mediated decay (NMD) candidate

Sequence IDs included in CCDS 56132.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000439718.1 ENSP00000411137.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000439718.1Link to Ensembl Protein Viewer:ENSP00000411137.1Re-query CCDS DB by Nucleotide ID:ENST00000439718Re-query CCDS DB by Protein ID:ENSP00000411137
Original member Current member EBI ENST00000615946.4 ENSP00000481423.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000615946.4Link to Ensembl Protein Viewer:ENSP00000481423.1Re-query CCDS DB by Nucleotide ID:ENST00000615946Re-query CCDS DB by Protein ID:ENSP00000481423
Original member Current member NCBI NM_001204107.1 NP_001191036.1 Accepted alive Link to Nucleotide Sequence:NM_001204107.1Link to Protein Sequence:NP_001191036.1Re-query CCDS DB by Nucleotide ID:NM_001204107Re-query CCDS DB by Protein ID:NP_001191036Link to BLAST:NP_001191036.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001191036.1 85 O43521-7 85 100% 0 0

Chromosomal Locations for CCDS 56132.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 111123746 111123869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 111150044 111150147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 111151822 111151851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (258 nt):
ATGGCAAAGCAACCTTCTGATGTAAGTTCTGAGTGTGACCGAGAAGGTAGACAATTGCAGCCTGCGGAGA
GGCCTCCCCAGCTCAGACCTGGGGCCCCTACCTCCCTACAGACAGAGCCACAAGCTTCCATGAGGCAGGC
TGAACCTGCAGATATGCGCCCAGAGATATGGATCGCCCAAGAGTTGCGGCGTATTGGAGACGAGTTTAAC
GCTTACTATGCAAGGAGGCTGGCAAAACTCCTGGCATCCTCCACCTGA

Translation (85 aa):
MAKQPSDVSSECDREGRQLQPAERPPQLRPGAPTSLQTEPQASMRQAEPADMRPEIWIAQELRRIGDEFN
AYYARRLAKLLASST


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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