NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS56034.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56034.1 Public Homo sapiens 17 EFCAB13 24 110 108 CCDS HistoryNCBI Gene:124989Re-query CCDS DB by CCDS ID:56034.1Re-query CCDS DB by GeneID:124989See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56034.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000517484.5 ENSP00000430048.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000517484.5Link to Ensembl Protein Viewer:ENSP00000430048.1Re-query CCDS DB by Nucleotide ID:ENST00000517484Re-query CCDS DB by Protein ID:ENSP00000430048
Original member Current member NCBI NM_001195192.2 NP_001182121.1 Accepted alive Link to Nucleotide Sequence:NM_001195192.2Link to Protein Sequence:NP_001182121.1Re-query CCDS DB by Nucleotide ID:NM_001195192Re-query CCDS DB by Protein ID:NP_001182121Link to BLAST:NP_001182121.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001182121.1 784 Q8IY85-2 784 100% 0 0

Chromosomal Locations for CCDS 56034.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 47328354 47328383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 47335196 47335356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 47341921 47342032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 47344162 47344292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 47345016 47345098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 47370437 47370508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 47374472 47374966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 47377766 47377903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 47379182 47379253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 47391437 47391580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 47394025 47394099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 47395834 47395977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 47402132 47402203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 47403878 47404021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 47404562 47404633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 47409647 47409691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 47412773 47412916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 47414848 47414919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 47429818 47429966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2355 nt):
ATGGAAACTAAAGTACATTTATTCTGCCAGGCAGAGGAAAATATTGACTTATTAGATGATGGCTCTAATT
CTTTTGCAACTGACTTGTCATCAGGAACTATTAACCACAAGAAATACATCAAGTTTTCTAAAACAATAGA
GAAGGAAATTTCACCGGAAATTAGGAGTTTGAGCCCAGAATATAAAAAAATATTTGAAACATCAATAATC
TTTTGTGGAGAAGAAAAGTCCTCTGATTTTTCAGGAGAAAAAAAAGTTGGGAGAAAGAGTTTACAAGTAC
AACAGCACAGTAAAAGAACTGAGATTATCCCTCCTTTTCTGAAGCTGTCAAAGGAGAAGGTGACAAGGAA
AGAAAACTCTTTATGCAAGTTGCCGAATCAGTACAGCGTTCACAAGACTTCATCACCTCTTTGTACATCT
TCTGCAATTACTCGGGAAAAGGAAATGCTGTCTAACCTCTACATGACATTATATGATGAAGTAACCCATG
GATATTTACACTCAAAAGAATTAAGTGGTAACCACATGGTGGATATTGGGGATATTATATTTACTTTGAA
TGAGCTACAGGAACAGTATGAGGATGTTTCAATTACAGAAGGATCACCTTTGAATGAAATTACTTCAGAC
AGAAAGTTATCAAGTGTAGCAGGATGCTATCTAAAATATAAGAAGAAAAATAGTTTGTCTTCCAAACTCC
CTGAACCTTCAATATCCAAAAAGTTAAATAAAAAAAGCAACCAATATTATAGCAAAATTATGGAGAATGA
TGACCTTGAATCTAAAAGACCAAAAAATACTTGGCAAATAAGAAAATTTCTGGGTGGGGTTGGCAGCAGT
AATGTAGGAGTCCAAGAACCATATTCAAAGAATGGCATAAACTTTAAAAAACATTCAGAGAAGGGTGAAA
TTCATGACTCAAAGTCTAAACCACAAAGCTTGAAGAGTAGTACAAGCCTCAGTAAGTCTCTGGATAAAAG
TGATATTTCTAGTATCCCAAAACTTCAGAAGCCAGCTGTAAGAAAGCATTCCAGTCTCCAAAAACAGGTT
TCGTCTACGGAAAAAACTGCAATTAGTACTCTGGAAAACTTCTGTGAAGCTATCAGTAAACTTCAAGAAA
ATTACATTGCAGCAGAAGAACTTCAGTCTATTTTGCCTTCAACAGGAATTAATTTATTAGATGAAGAATT
CCAGAAGATTGTGACAGACACTAGTAGAAATGAGAATGGAATGGTGGAGTTAGATGACTTTGTAAATGCT
CTCGCCAAGGAGCGAAGTTTTCCTGAATGCAATGCGTTGCCTGGTGTCATTAAAGCCATTGATAAAATTA
AAGATAAAAATGTGGATTATGAGGATCTAAATACTTGTCTTCAAAATTTTGGTATTTACCTTTCTAAGCC
AGAATTTAAGAAGATCACAGAACTGACTGAAGCTGGTGAAACAAAAAAAGTGAATTTTAAAGAATTCATT
GATACTATGATGAGCAACACGGAATGCTTCTCTGAAAAATTAGTATTGCCTGATGCTATTGAAACCCTCG
ACGATCTCAGAAAGGAGACGATGAGTGTTTCTGACCTGTGGAATACTCTGTCTAGTTTGAATAGTAATTT
AAAAAAGGATGAATTTCTAGCTGCATTGGAACTAGTGACAGTTGATGAAGGTGACAAAGTACAATTTGAA
GAATTTGCAAAAGTAGTAAGGAATATGCGTGATGCTGCCAGGTTAGAAGAGTTACAGGAAGTTGTCTTAG
CTGCTGATTTGCTGGAAGGTGACATGATAGCTGGGAAGAACTTGGAAGACTTTCTAAGAAATGTTGGGAT
TAAGTCACCTAAAGAAGAGGTAGAGAAAATTCTTCAATCAGATTTTGTTTCTGAAGATAACATGGTGAAC
ATTAAAGACTGTATGAGGGCTTTGAGGGACACCCAGAAATTTTCCAATTATATTGATTTCAGGAAAGAGG
CTTCAAATCTAAAATTACCAAAGGTAAACGAGATTAAAGAAGCTGCTAACATCTTGTCACATGTCGATAA
TGGCAAGATTGGTATACCTGATTTGGAGCATGCCTTGAAATGTTTGAATGTTAATTTAACTGAGGAGGAC
TTCAATGAAGCCCTTAACTGTTGTAACGTCAGTGATAATATGGAGGTGGATTTAAAAGATTTCTTAATGA
AAATGAAAGAAAGTCCACATTTCCAAAAGTCCAAGGCTACACAGATACTCTTAGCTACTACCCAAATTCT
CCAGAATGATCTAGTTGATGTCTCTGACCTCAAGACATTATTGATGGACAAGGACCTTCATACAGCTAAT
GCTATACTTACTGTAATGTTAAGACATGTACCTGAACATGGTTAG

Translation (784 aa):
METKVHLFCQAEENIDLLDDGSNSFATDLSSGTINHKKYIKFSKTIEKEISPEIRSLSPEYKKIFETSII
FCGEEKSSDFSGEKKVGRKSLQVQQHSKRTEIIPPFLKLSKEKVTRKENSLCKLPNQYSVHKTSSPLCTS
SAITREKEMLSNLYMTLYDEVTHGYLHSKELSGNHMVDIGDIIFTLNELQEQYEDVSITEGSPLNEITSD
RKLSSVAGCYLKYKKKNSLSSKLPEPSISKKLNKKSNQYYSKIMENDDLESKRPKNTWQIRKFLGGVGSS
NVGVQEPYSKNGINFKKHSEKGEIHDSKSKPQSLKSSTSLSKSLDKSDISSIPKLQKPAVRKHSSLQKQV
SSTEKTAISTLENFCEAISKLQENYIAAEELQSILPSTGINLLDEEFQKIVTDTSRNENGMVELDDFVNA
LAKERSFPECNALPGVIKAIDKIKDKNVDYEDLNTCLQNFGIYLSKPEFKKITELTEAGETKKVNFKEFI
DTMMSNTECFSEKLVLPDAIETLDDLRKETMSVSDLWNTLSSLNSNLKKDEFLAALELVTVDEGDKVQFE
EFAKVVRNMRDAARLEELQEVVLAADLLEGDMIAGKNLEDFLRNVGIKSPKEEVEKILQSDFVSEDNMVN
IKDCMRALRDTQKFSNYIDFRKEASNLKLPKVNEIKEAANILSHVDNGKIGIPDLEHALKCLNVNLTEED
FNEALNCCNVSDNMEVDLKDFLMKMKESPHFQKSKATQILLATTQILQNDLVDVSDLKTLLMDKDLHTAN
AILTVMLRHVPEHG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH