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Report for CCDS56001.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56001.1 Public Homo sapiens 16 CMTM2 24 110 108 CCDS HistoryNCBI Gene:146225Re-query CCDS DB by CCDS ID:56001.1Re-query CCDS DB by GeneID:146225See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56001.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000379486.6 ENSP00000368800.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000379486.6Link to Ensembl Protein Viewer:ENSP00000368800.2Re-query CCDS DB by Nucleotide ID:ENST00000379486Re-query CCDS DB by Protein ID:ENSP00000368800
Original member Current member NCBI NM_001199317.2 NP_001186246.1 Accepted alive Link to Nucleotide Sequence:NM_001199317.2Link to Protein Sequence:NP_001186246.1Re-query CCDS DB by Nucleotide ID:NM_001199317Re-query CCDS DB by Protein ID:NP_001186246Link to BLAST:NP_001186246.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001186246.1 195 Q8TAZ6-2 195 100% 0 0

Chromosomal Locations for CCDS 56001.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 66579608 66579892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 66586997 66587098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 66587919 66588119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (588 nt):
ATGGCACCTAAGGCGGCAAAGGGGGCCAAGCCAGAGCCAGCACCAGCTCCACCTCCACCCGGGGCCAAAC
CCGAGGAAGACAAGAAGGACGGTAAGGAGCCATCGGACAAACCTCAAAAGGCGGTGCAGGACCATAAGGA
GCCATCGGACAAACCTCAAAAGGCGGTGCAGCCCAAGCACGAAGTGGGCACGAGGAGGGGGTGTCGCCGC
TACCGGTGGGAATTAAAAGACAGCAATAAAGAGTTCTGGCTCTTGGGGCACGCTGAGATCAAGATTCGGA
GTTTGGACCTCTTCAACGACCTGATTGCTTGTGCGTTCCTTGTGGGAGCCGTGGTCTTTGCTGTGAGAAG
TCGGCGATCCATGAATCTCCACTACTTACTTGCTGTGATCCTTATTGGTGCGGCTGGAGTTTTTGCTTTT
ATCGATGTGTGTCTTCAAAGAAACCACTTCAGAGGCAAGAAGGCCAAAAAGCATATGCTGGTTCCTCCTC
CAGGAAAGGAAAAAGGACCCCAGCAGGGCAAGGGACCAGAACCCGCCAAGCCACCAGAACCTGGCAAGCC
ACCAGGGCCAGCAAAGGGAAAGAAATGA

Translation (195 aa):
MAPKAAKGAKPEPAPAPPPPGAKPEEDKKDGKEPSDKPQKAVQDHKEPSDKPQKAVQPKHEVGTRRGCRR
YRWELKDSNKEFWLLGHAEIKIRSLDLFNDLIACAFLVGAVVFAVRSRRSMNLHYLLAVILIGAAGVFAF
IDVCLQRNHFRGKKAKKHMLVPPPGKEKGPQQGKGPEPAKPPEPGKPPGPAKGKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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