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Report for CCDS5590.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5590.1 Public Homo sapiens 7 POMZP3 24 110 108 CCDS HistoryNCBI Gene:22932Re-query CCDS DB by CCDS ID:5590.1Re-query CCDS DB by GeneID:22932See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5590.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000275569.8 ENSP00000275569.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000275569.8Link to Ensembl Protein Viewer:ENSP00000275569.4Re-query CCDS DB by Nucleotide ID:ENST00000275569Re-query CCDS DB by Protein ID:ENSP00000275569
Original member Current member NCBI NM_152992.4 NP_694537.1 Accepted alive Link to Nucleotide Sequence:NM_152992.4Link to Protein Sequence:NP_694537.1Re-query CCDS DB by Nucleotide ID:NM_152992Re-query CCDS DB by Protein ID:NP_694537Link to BLAST:NP_694537.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_694537.1 115 Q6PJE2-5 115 100% 0 0

Chromosomal Locations for CCDS 5590.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 76610213 76610215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 76618183 76618300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 76625522 76625683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 76626000 76626064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (348 nt):
ATGGTGTGTAGCCCAGTGACTCTGAGGATCGCCCCTCCTGACAGAAGATTTTCGCGTTCTGCGATACCAG
AGCAGATAATCAGCTCAACACTGTCCTCACCATCAAGTAATGCCCCAGACCCATGTGCAAAGGAGACTGT
ACTGAGTGCCCTCAAAGAGAAGAAGAAGAAAAGGACAGTGGAGGAAGAAGACCAAATATTCCTTGATGGC
CAGGAAAATAAAAGAAGCTGTCTTGTCGACGGTCTCACTGATGCCTCTTCTGCATTCAAAGTTCCTCGAC
CCGGGCCAGATACACTCCAGTTCACAGTGGATGTCTTCCACTTTGCTAATGACTCCAGAAACATGTGA

Translation (115 aa):
MVCSPVTLRIAPPDRRFSRSAIPEQIISSTLSSPSSNAPDPCAKETVLSALKEKKKKRTVEEEDQIFLDG
QENKRSCLVDGLTDASSAFKVPRPGPDTLQFTVDVFHFANDSRNM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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