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Report for CCDS55807.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55807.1 Public Homo sapiens 12 GSG1 24 110 108 CCDS HistoryNCBI Gene:83445Re-query CCDS DB by CCDS ID:55807.1Re-query CCDS DB by GeneID:83445See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55807.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000537302.5 ENSP00000441718.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000537302.5Link to Ensembl Protein Viewer:ENSP00000441718.1Re-query CCDS DB by Nucleotide ID:ENST00000537302Re-query CCDS DB by Protein ID:ENSP00000441718
Original member Current member NCBI NM_001206843.3 NP_001193772.1 Accepted alive Link to Nucleotide Sequence:NM_001206843.3Link to Protein Sequence:NP_001193772.1Re-query CCDS DB by Nucleotide ID:NM_001206843Re-query CCDS DB by Protein ID:NP_001193772Link to BLAST:NP_001193772.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001193772.1 298 Q2KHT4-2 298 100% 0 0

Chromosomal Locations for CCDS 55807.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 13084901 13085243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 13087152 13087263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 13088862 13088909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 13089208 13089276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 13090503 13090818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 13095599 13095607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (897 nt):
ATGGCCAAGATGGAGCTCTCGAAGGCCTTCTCTGGCCAGCGGACACTCCTATCTGCCATCCTCAGCATGC
TATCACTCAGCTTCTCCACAACATCCCTGCTCAGCAACTACTGGTTTGTGGGCACACAGAAGGTGCCCAA
GCCCCTGTGCGAGAAAGGTCTGGCAGCCAAGTGCTTTGACATGCCAGTGTCCCTGGATGGAGATACCAAC
ACATCCACCCAGGAGGTGGTACAATACAACTGGGAGACTGGGGATGACCGGTTCTCCTTCCGGAGCTTCC
GGAGTGGCATGTGGCTATCCTGTGAGGAAACTGTGGAAGAACCAGCACTGCTCCATCCCCAGTCCTGGAA
ACAATTTAGAGCCCTTCGGTCCAGTGGTACAGCGGCAGCAAAAGGGGAGAGGTGCCGAAGTTTCATTGAA
CTTACACCACCAGCCAAGAGAGGTCTCCTGGGGATGGTGGCCCACATGATGTATTCACAAGTCTTCCAAG
CGACTGTCAACTTGGGTCCAGAAGACTGGAGACCACATGTTTGGAATTATGGCTGGGCCTTCTACATGGC
CTGGCTCTCCTTCACCTGCTGCATGGCGTCGGCTGTCACCACCTTCAACACGTACACCAGGATGGTGCTG
GAGTTCAAGTGCAAGCATAGTAAGAGCTTCAAGGAAAACCCGAACTGCCTACCACATCACCATCAGTGTT
TCCCTCGGCGGCTGTCAAGTGCAGCCCCCACCGTGGGTCCTTTGACCAGCTACCACCAGTATCATAATCA
GCCCATCCACTCTGTCTCTGAGGGAGTCGACTTCTACTCCGAGCTGCGGAACAAGGGATTTCAAAGAGGG
GCCAGCCAGGAGCTGAAAGAAGCAGTTAGGTCATCTGTAGAGGAAGAGCAGTGTTAG

Translation (298 aa):
MAKMELSKAFSGQRTLLSAILSMLSLSFSTTSLLSNYWFVGTQKVPKPLCEKGLAAKCFDMPVSLDGDTN
TSTQEVVQYNWETGDDRFSFRSFRSGMWLSCEETVEEPALLHPQSWKQFRALRSSGTAAAKGERCRSFIE
LTPPAKRGLLGMVAHMMYSQVFQATVNLGPEDWRPHVWNYGWAFYMAWLSFTCCMASAVTTFNTYTRMVL
EFKCKHSKSFKENPNCLPHHHQCFPRRLSSAAPTVGPLTSYHQYHNQPIHSVSEGVDFYSELRNKGFQRG
ASQELKEAVRSSVEEEQC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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