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Report for CCDS5576.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5576.1 Public Homo sapiens 7 GTF2IRD2 24 110 108 CCDS HistoryNCBI Gene:84163Re-query CCDS DB by CCDS ID:5576.1Re-query CCDS DB by GeneID:84163See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5576.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000451013.7 ENSP00000406723.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000451013.7Link to Ensembl Protein Viewer:ENSP00000406723.3Re-query CCDS DB by Nucleotide ID:ENST00000451013Re-query CCDS DB by Protein ID:ENSP00000406723
Original member Current member EBI ENST00000625377.3 ENSP00000486581.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000625377.3Link to Ensembl Protein Viewer:ENSP00000486581.2Re-query CCDS DB by Nucleotide ID:ENST00000625377Re-query CCDS DB by Protein ID:ENSP00000486581
Original member Current member NCBI NM_173537.5 NP_775808.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_173537.5Link to Protein Sequence:NP_775808.4Re-query CCDS DB by Nucleotide ID:NM_173537Re-query CCDS DB by Protein ID:NP_775808Link to BLAST:NP_775808.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_775808.4 949 Q86UP8-1 949 100% 0 0

Chromosomal Locations for CCDS 5576.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 74796662 74798265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 74801985 74802013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 74803298 74803481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 74804777 74804860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 74806934 74807011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 74809108 74809173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 74810896 74810952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 74812739 74812816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 74819554 74819597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 74819969 74820023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 74822427 74822455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 74822624 74822807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 74824933 74825052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 74832805 74832943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 74836280 74836378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2850 nt):
ATGGCCCAGGTAGCAGTGTCCACCCTGCCTGTTGAAGAAGAGTCCTCCTCAGAGACCAGGATGGTGGTGA
CATTCCTCGTGTCTGCCCTCGAATCCATGTGTAAAGAACTGGCCAAGTCCAAGGCAGAAGTGGCCTGCAT
CGCAGTGTACGAAACAGACGTGTTTGTCGTCGGAACCGAGAGAGGATGCGCTTTTGTTAATGCCAGGACG
GATTTTCAGAAAGATTTTGCAAAATACTGCGTTGCAGAGGGACTGTGTGAGGTGAAACCTCCCTGCCCTG
TGAACGGGATGCAGGTCCACTCAGGCGAAACGGAAATACTCAGGAAGGCAGTGGAGGACTATTTCTGCTT
TTGTTATGGTAAAGCCTTAGGGACAACAGTGATGGTGCCTGTTCCCTATGAGAAGATGCTGCGAGACCAG
TCGGCTGTGGTAGTGCAGGGGCTTCCGGAAGGCGTTGCCTTTCAACACCCTGAGAATTACGACCTTGCAA
CCCTGAAATGGATTTTGGAGAACAAAGCAGGGATTTCATTCATCATAAATAGACCCTTCCTAGGACCAGA
GAGTCAGCTGGGTGGCCCTGGGATGGTAACAGATGCGGAGAGATCCATAGTATCACCAAGTGAAAGCTGC
GGCCCCATCAATGTGAAAACTGAACCCATGGAAGATTCTGGCATTTCACTGAAAGCAGAAGCTGTCTCAG
TCAAGAAAGAATCAGAAGATCCTAATTACTATCAATATAATATGCAAGGAAGCCACCCTTCTTCCACAAG
CAATGAAGTAATAGAAATGGAATTACCAATGGAAGATTCCACTCCGCTGGTCCCTTCAGAAGAACCAAAT
GAGGACCCTGAAGCCGAGGTGAAAATCGAAGGAAACACAAATTCATCCAGTGTTACAAATTCTGCAGCAG
GTGTTGAAGATCTTAACATCGTTCAAGTGACTGTTCCAGATAATGAGAAGGAAAGATTATCAAGCATTGA
AAAGATTAAACAGCTAAGAGAACAAGTTAATGACCTCTTTAGCCGAAAATTTGGTGAAGCAATTGGCGTG
GATTTCCCTGTGAAAGTTCCCTACAGGAAGATCACATTCAACCCTGGCTGTGTGGTGATTGATGGCATGC
CCCCGGGGGTGGTATTCAAGGCCCCCGGCTATCTGGAAATCAGTTCCATGAGGAGGATCTTGGAGGCAGC
TGAGTTTATCAAATTCACAGTCATCAGGCCGCTTCCAGGGCTTGAGCTCAGTAATGTGGGAAAACGCAAG
ATAGACCAGGAGGGCCGTGTGTTTCAAGAAAAGTGGGAGAGAGCGTATTTCTTCGTGGAAGTACAGAATA
TTCCAACATGTCTCATATGCAAACAAAGCATGTCTGTGTCCAAAGAATATAACCTAAGACGCCACTATCA
AACCAATCACAGCAAGCATTATGACCAGTATATGGAAAGAATGCGTGACGAGAAGCTTCACGAGCTGAAA
AAAGGGCTCAGGAAGTATCTCTTAGGCTCATCAGACACCGAGTGTCCCGAGCAAAAACAAGTGTTTGCAA
ACCCAAGTCCAACCCAGAAATCCCCCGTGCAGCCTGTAGAGGACCTAGCTGGGAACTTATGGGAGAAGTT
ACGTGAAAAAATCAGGTCTTTTGTGGCATATTCTATCGCAATCGATGAGATCACGGATATAAATAATACC
ACCCAGTTGGCCATATTCATCCGTGGTGTCGATGAGAATTTCGATGTGTCCGAAGAACTTCTGGACACGG
TGCCCATGACGGGTACAAAATCTGGCAACGAGATCTTTTCGCGTGTTGAGAAAAGCCTGAAAAACTTCTG
TATCGACTGGTCGAAATTAGTAAGCGTGGCCTCCACTGGCACCCCAGCGATGGTGGATGCCAATAACGGG
CTTGTCACAAAACTGAAGTCCAGGGTGGCGACGTTCTGCAAGGGTGCGGAACTGAAGTCCATCTGTTGTA
TAATTCATCCGGAATCACTCTGTGCTCAGAAGTTGAAGATGGACCACGTCATGGACGTGGTAGTGAAGTC
CGTGAACTGGATATGCTCCCGGGGACTGAACCACAGTGAGTTCACAACCTTGCTCTATGAGCTGGACAGC
CAGTATGGTAGCCTCCTGTACTACACGGAGATTAAGTGGCTCAGTCGCGGGCTCGTGCTAAAGAGATTTT
TCGAATCCTTGGAAGAAATCGACTCCTTCATGTCATCCAGAGGGAAACCCCTGCCTCAACTGAGCTCCAT
AGATTGGATCCGAGACCTGGCCTTCTTGGTTGACATGACGATGCATCTGAACGCTTTGAACATCTCTCTC
CAAGGACACTCCCAAATCGTCACGCAGATGTATGACCTGATCCGGGCGTTCCTAGCAAAACTGTGCCTCT
GGGAGACTCATTTGACGAGGAATAATCTGGCCCACTTTCCCACCCTGAAATTGGCTTCCAGAAATGAAAG
CGATGGCCTGAACTACATTCCCAAAATCGCGGAACTCCAGACCGAATTCCAGAAAAGGCTGTCTGATTTC
AAACTCTACGAAAGCGAACTGACTCTGTTCAGCTCCCCGTTCTCCACGAAGATCGACAGTGTGCACGAGG
AGCTCCAGATGGAGGTTATCGACCTGCAATGCAACACGGTCCTGAAGACGAAATACGACAAGGTGGGAAT
ACCAGAATTCTACAAGTACCTCTGGGGTAGCTACCCGAAATACAAGCACCATTGCGCAAAGATTCTTTCC
ATGTTCGGGAGCACCTACATCTGCGAACAGCTGTTCTCCATTATGAAACTGAGCAAAACAAAATACTGCT
CCCAGTTAAAGGATTCCCAGTGGGATTCTGTACTCCACATCGCAACGTGA

Translation (949 aa):
MAQVAVSTLPVEEESSSETRMVVTFLVSALESMCKELAKSKAEVACIAVYETDVFVVGTERGCAFVNART
DFQKDFAKYCVAEGLCEVKPPCPVNGMQVHSGETEILRKAVEDYFCFCYGKALGTTVMVPVPYEKMLRDQ
SAVVVQGLPEGVAFQHPENYDLATLKWILENKAGISFIINRPFLGPESQLGGPGMVTDAERSIVSPSESC
GPINVKTEPMEDSGISLKAEAVSVKKESEDPNYYQYNMQGSHPSSTSNEVIEMELPMEDSTPLVPSEEPN
EDPEAEVKIEGNTNSSSVTNSAAGVEDLNIVQVTVPDNEKERLSSIEKIKQLREQVNDLFSRKFGEAIGV
DFPVKVPYRKITFNPGCVVIDGMPPGVVFKAPGYLEISSMRRILEAAEFIKFTVIRPLPGLELSNVGKRK
IDQEGRVFQEKWERAYFFVEVQNIPTCLICKQSMSVSKEYNLRRHYQTNHSKHYDQYMERMRDEKLHELK
KGLRKYLLGSSDTECPEQKQVFANPSPTQKSPVQPVEDLAGNLWEKLREKIRSFVAYSIAIDEITDINNT
TQLAIFIRGVDENFDVSEELLDTVPMTGTKSGNEIFSRVEKSLKNFCIDWSKLVSVASTGTPAMVDANNG
LVTKLKSRVATFCKGAELKSICCIIHPESLCAQKLKMDHVMDVVVKSVNWICSRGLNHSEFTTLLYELDS
QYGSLLYYTEIKWLSRGLVLKRFFESLEEIDSFMSSRGKPLPQLSSIDWIRDLAFLVDMTMHLNALNISL
QGHSQIVTQMYDLIRAFLAKLCLWETHLTRNNLAHFPTLKLASRNESDGLNYIPKIAELQTEFQKRLSDF
KLYESELTLFSSPFSTKIDSVHEELQMEVIDLQCNTVLKTKYDKVGIPEFYKYLWGSYPKYKHHCAKILS
MFGSTYICEQLFSIMKLSKTKYCSQLKDSQWDSVLHIAT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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