NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS55688.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55688.1 Public Homo sapiens 1 ATF3 24 110 108 CCDS HistoryNCBI Gene:467Re-query CCDS DB by CCDS ID:55688.1Re-query CCDS DB by GeneID:467See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55688.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000336937.8 ENSP00000336908.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000336937.8Link to Ensembl Protein Viewer:ENSP00000336908.4Re-query CCDS DB by Nucleotide ID:ENST00000336937Re-query CCDS DB by Protein ID:ENSP00000336908
Original member Current member NCBI NM_001206486.2 NP_001193415.1 Accepted alive Link to Nucleotide Sequence:NM_001206486.2Link to Protein Sequence:NP_001193415.1Re-query CCDS DB by Nucleotide ID:NM_001206486Re-query CCDS DB by Protein ID:NP_001193415Link to BLAST:NP_001193415.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001193415.1 106 P18847-4 106 100% 0 0

Chromosomal Locations for CCDS 55688.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 212615022 212615060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 212615148 212615261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 212618127 212618234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 212619046 212619105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (321 nt):
ATGATGCTTCAACACCCAGGCCAGGTCTCTGCCTCGGAAGAAGAGCTGAGGTTTGCCATCCAGAACAAGC
ACCTCTGCCACCGGATGTCCTCTGCGCTGGAATCAGTCACTGTCAGCGACAGACCCCTCGGGGTGTCCAT
CACAAAAGCCGAGGTAGCCCCTGAAGAAGATGAAAGGAAAAAGAGGCGACGAGAAAGAAATAAGATTGCA
GCTGCAAAGTGCCGAAACAAGAAGAAGGAGAAGACGGAGTGCCTGCAGAAACTCCCAAGGCCCTTTTGGG
TCCAGAAGACCTGCATATGGGCTGTTGACTCATGCAAATGA

Translation (106 aa):
MMLQHPGQVSASEEELRFAIQNKHLCHRMSSALESVTVSDRPLGVSITKAEVAPEEDERKKRRRERNKIA
AAKCRNKKKEKTECLQKLPRPFWVQKTCIWAVDSCK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH