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Report for CCDS55594.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55594.1 Public Homo sapiens 1 FOXJ3 24 110 108 CCDS HistoryNCBI Gene:22887Re-query CCDS DB by CCDS ID:55594.1Re-query CCDS DB by GeneID:22887See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 55594.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000361776.5 ENSP00000354449.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000361776.5Link to Ensembl Protein Viewer:ENSP00000354449.1Re-query CCDS DB by Nucleotide ID:ENST00000361776Re-query CCDS DB by Protein ID:ENSP00000354449
Original member Current member NCBI NM_001198852.2 NP_001185781.1 Accepted alive Link to Nucleotide Sequence:NM_001198852.2Link to Protein Sequence:NP_001185781.1Re-query CCDS DB by Nucleotide ID:NM_001198852Re-query CCDS DB by Protein ID:NP_001185781Link to BLAST:NP_001185781.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001185781.1 588 Q9UPW0-2 588 100% 0 0

Chromosomal Locations for CCDS 55594.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 42179710 42179825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 42181917 42182024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 42188737 42188928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 42189303 42189404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 42191303 42191719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 42194890 42195064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 42199102 42199230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 42227883 42227966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 42265115 42265189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 42278348 42278672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 42311050 42311093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1767 nt):
ATGGGTTTGTATGGACAGGCTTGTCCATCTGTAACTTCATTAAGGATGACATCTGAACTGGAGAGCAGCC
TAACGTCTATGGACTGGTTACCACAGCTCACCATGAGAGCAGCCATCCAAAAATCTGATGCTACACAAAA
TGCACATGGAACAGGAATTTCTAAGAAGAATGCACTCCTTGACCCAAATACAACTCTGGACCAGGAAGAA
GTCCAACAGCACAAAGATGGGAAACCTCCATACAGTTATGCCAGCCTCATTACATTTGCAATTAATAGCT
CACCCAAAAAGAAAATGACTTTAAGTGAAATTTATCAGTGGATTTGTGATAACTTCCCATATTATAGAGA
GGCTGGCAGTGGTTGGAAGAATTCCATACGACATAATCTGTCATTGAACAAATGTTTCCTTAAAGTGCCT
CGATCTAAGGATGACCCTGGAAAGGGGTCCTACTGGGCAATAGACACCAATCCGAAGGAAGATGTGCTGC
CTACTCGGCCAAAGAAGAGGGCACGATCTGTAGAACGGGTAACATTGTATAACACTGATCAGGATGGTAG
TGATAGCCCACGCAGTAGCCTTAACAACAGTCTCTCAGACCAGAGTTTGGCATCTGTTAATTTGAACAGT
GTTGGAAGTGTGCATAGTTATACACCGGTGACAAGCCATCCAGAATCAGTCTCTCAATCATTAACTCCTC
AGCAGCAACCACAGTACAACCTTCCAGAAAGAGACAAGCAACTACTTTTCTCAGAATATAATTTTGAAGA
TCTTAGTGCCTCATTTCGGAGCCTTTATAAGTCAGTTTTTGAGCAGTCACTTAGTCAACAAGGTTTGATG
AACATCCCTTCTGAATCTTCCCAGCAGTCCCACACTTCATGTACCTATCAGCACTCTCCCAGCAGTACAG
TGAGCACTCACCCACACAGCAACCAAAGCAGCCTGTCCAACAGTCATGGCAGTGGCCTCAACACCACAGG
CAGTAATTCGGTTGCACAGGTCTCACTGTCTCACCCCCAGATGCACACACAGCCATCTCCACATCCTCCC
CATCGACCGCATGGTTTACCGCAGCATCCGCAGCGTTCCCCACACCCAGCACCACACCCACAGCAACACA
GCCAGCTCCAGTCCCCTCACCCCCAGCATCCCTCTCCACATCAACACATACAGCACCATCCGAACCATCA
GCATCAGACGTTAACACATCAGGCACCCCCACCCCCACAACAGGTATCCTGTAATTCTGGTGTTTCAAAT
GATTGGTATGCGACACTTGATATGCTAAAAGAAAGCTGTCGAATTGCCAGCAGTGTTAATTGGTCAGATG
TAGACCTTTCACAGTTTCAAGGTCTGATGGAGAGTATGAGACAGGCAGATCTCAAGAACTGGTCTTTAGA
CCAGGTTCAGTTTGCCGATCTTTGTTCTTCTCTTAATCAGTTCTTTACACAAACTGGCCTTATACATTCA
CAGAGTAATGTTCAACAAAATGTTTGTCATGGTGCCATGCATCCAACAAAACCTTCCCAACACATTGGAA
CAGGAAATTTGTACATAGATTCTAGGCAAAATCTCCCTCCTTCAGTGATGCCACCCCCTGGTTATCCTCA
TATCCCACAGGCACTCAGCACTCCAGGAACAACGATGGCAGGCCATCACAGAGCCATGAACCAGCAGCAC
ATGATGCCTTCCCAAGCCTTCCAGATGCGGCGTTCCCTGCCTCCAGATGACATCCAGGATGACTTTGATT
GGGATTCAATTGTGTAG

Translation (588 aa):
MGLYGQACPSVTSLRMTSELESSLTSMDWLPQLTMRAAIQKSDATQNAHGTGISKKNALLDPNTTLDQEE
VQQHKDGKPPYSYASLITFAINSSPKKKMTLSEIYQWICDNFPYYREAGSGWKNSIRHNLSLNKCFLKVP
RSKDDPGKGSYWAIDTNPKEDVLPTRPKKRARSVERVTLYNTDQDGSDSPRSSLNNSLSDQSLASVNLNS
VGSVHSYTPVTSHPESVSQSLTPQQQPQYNLPERDKQLLFSEYNFEDLSASFRSLYKSVFEQSLSQQGLM
NIPSESSQQSHTSCTYQHSPSSTVSTHPHSNQSSLSNSHGSGLNTTGSNSVAQVSLSHPQMHTQPSPHPP
HRPHGLPQHPQRSPHPAPHPQQHSQLQSPHPQHPSPHQHIQHHPNHQHQTLTHQAPPPPQQVSCNSGVSN
DWYATLDMLKESCRIASSVNWSDVDLSQFQGLMESMRQADLKNWSLDQVQFADLCSSLNQFFTQTGLIHS
QSNVQQNVCHGAMHPTKPSQHIGTGNLYIDSRQNLPPSVMPPPGYPHIPQALSTPGTTMAGHHRAMNQQH
MMPSQAFQMRRSLPPDDIQDDFDWDSIV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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