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Report for CCDS55434.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55434.1 Public Homo sapiens X LAS1L 24 110 108 CCDS HistoryNCBI Gene:81887Re-query CCDS DB by CCDS ID:55434.1Re-query CCDS DB by GeneID:81887See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55434.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000374807.9 ENSP00000363940.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000374807.9Link to Ensembl Protein Viewer:ENSP00000363940.5Re-query CCDS DB by Nucleotide ID:ENST00000374807Re-query CCDS DB by Protein ID:ENSP00000363940
Original member Current member NCBI NM_001170649.2 NP_001164120.1 Accepted alive Link to Nucleotide Sequence:NM_001170649.2Link to Protein Sequence:NP_001164120.1Re-query CCDS DB by Nucleotide ID:NM_001170649Re-query CCDS DB by Protein ID:NP_001164120Link to BLAST:NP_001164120.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001164120.1 717 Q9Y4W2-2 717 100% 0 0

Chromosomal Locations for CCDS 55434.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 65512775 65512901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 65514823 65514973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 65517987 65518465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 65523560 65523707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 65524056 65524262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 65524965 65525050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 65528260 65528369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 65529212 65529258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 65529594 65529878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 65531357 65531438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 65532561 65532630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 65533610 65533735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 65534480 65534715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2154 nt):
ATGTCGTGGGAATCCGGGGCCGGGCCAGGTCTAGGTTCCCAGGGGATGGATCTCGTGTGGAGTGCGTGGT
ACGGAAAGTGCGTTAAAGGGAAAGGGTCGTTGCCACTCTCGGCCCACGGCATCGTGGTCGCCTGGCTCAG
CAGGGCCGAGTGGGACCAGGTGACGGTTTATCTGTTCTGTGACGACCATAAGTTGCAGCGGTACGCGCTT
AACCGCATCACGGTGTGGAGGAGCAGGTCAGGCAACGAACTCCCTCTGGCAGTGGCTTCTACTGCTGACC
TGATACGCTGTAAGCTCTTGGATGTAACTGGTGGCTTGGGCACTGATGAACTTAGACTGCTCTATGGCAT
GGCATTGGTCAGGTTTGTGAATCTTATCTCAGAGAGGAAGACAAAGTTTGCCAAGGTCCCCCTCAAGTGT
CTGGCTCAAGAGGTAAATATTCCGGATTGGATTGTTGACCTTCGCCATGAGTTGACCCACAAGAAAATGC
CCCATATAAATGACTGCCGCAGAGGCTGCTACTTTGTCCTGGATTGGCTCCAGAAGACCTATTGGTGCCG
CCAACTGGAGAACAGCCTGAGAGAGACCTGGGAGTTGGAGGAGTTCAGGGAAGGGATAGAGGAAGAGGAT
CAAGAGGAAGATAAGAACATTGTTGTTGATGACATCACAGAACAGAAACCAGAGCCTCAGGATGATGGGA
AAAGTACGGAGTCAGATGTAAAGGCCGATGGAGACAGCAAAGGCAGCGAAGAGGTGGATTCTCATTGCAA
AAAGGCCCTGAGTCATAAAGAGCTATATGAAAGAGCCCGAGAACTGCTGGTATCATACGAAGAGGAGCAG
TTTACGGTGCTGGAGAAATTTAGGTATTTACCTAAGGCCATTAAGGCGTGGAATAACCCGTCCCCACGTG
TAGAATGTGTCCTGGCAGAGCTCAAGGGCGTTACATGCGAGAACAGGGAGGCTGTGCTGGATGCTTTTCT
GGATGATGGCTTCCTTGTCCCCACATTTGAACAGTTGGCAGCTTTGCAGATAGAATATGAAGAAAACGTG
GACTTGAATGACGTCCTGGTGCCAAAGCCGTTCTCTCAGTTCTGGCAGCCCCTGCTCAGGGGCCTGCACT
CCCAGAACTTCACGCAGGCCCTATTGGAGAGGATGCTCTCTGAACTGCCAGCCTTGGGGATCAGCGGGAT
CCGGCCTACCTACATCCTCAGATGGACCGTTGAACTGATCGTGGCCAACACCAAGACTGGACGGAATGCT
CGCCGATTTTCTGCAGGCCAGTGGGAAGCAAGAAGGGGCTGGAGGCTGTTCAACTGCTCCGCCTCCCTTG
ACTGGCCCCGGATGGTTGAGTCCTGCTTGGGCTCACCTTGCTGGGCCAGCCCCCAACTCCTTCGGATCAT
CTTCAAAGCCATGGGGCAGGGCCTGCCAGACGAGGAGCAGGAGAAGCTGCTGCGCATCTGTTCCATTTAT
ACCCAGAGTGGAGAAAACAGCCTGGTGCAGGAGGGCTCTGAGGCCTCCCCCATTGGGAAGTCTCCATATA
CACTAGACAGCCTGTATTGGAGCGTCAAGCCAGCCAGCTCCAGCTTCGGGTCTGAAGCAAAGGCCCAGCA
ACAGGAGGAGCAGGGCAGTGTTAATGATGTCAAGGAAGAGGAGAAGGAGGAGAAAGAGGTCTTGCCAGAC
CAGGTAGAGGAGGAGGAAGAAAATGATGACCAAGAGGAGGAAGAGGAGGATGAAGATGATGAAGATGATG
AAGAGGAAGACAGAATGGAGGTGGGGCCTTTCTCTACAGGGCAAGAGTCCCCCACTGCCGAGAATGCTAG
GCTTCTGGCCCAGAAAAGAGGAGCTTTGCAGGGCTCTGCATGGCAGGTTAGCTCAGAAGACGTGCGATGG
GACACATTTCCCCTAGGCCGAATGCCAGGTCAGACCGAGGACCCAGCAGAGCTCATGCTGGAGAATTATG
ACACCATGTATCTTTTGGACCAGCCTGTGCTAGAGCAGCGGCTGGAACCCTCAACATGCAAGACTGACAC
CTTGGGCCTGAGCTGTGGTGTCGGCAGTGGCAACTGCAGCAACAGCAGCAGCAGCAACTTCGAGGGCCTT
CTCTGGAGCCAGGGGCAGCTGCATGGGCTCAAAACTGGCCTGCAGCTCTTCTGA

Translation (717 aa):
MSWESGAGPGLGSQGMDLVWSAWYGKCVKGKGSLPLSAHGIVVAWLSRAEWDQVTVYLFCDDHKLQRYAL
NRITVWRSRSGNELPLAVASTADLIRCKLLDVTGGLGTDELRLLYGMALVRFVNLISERKTKFAKVPLKC
LAQEVNIPDWIVDLRHELTHKKMPHINDCRRGCYFVLDWLQKTYWCRQLENSLRETWELEEFREGIEEED
QEEDKNIVVDDITEQKPEPQDDGKSTESDVKADGDSKGSEEVDSHCKKALSHKELYERARELLVSYEEEQ
FTVLEKFRYLPKAIKAWNNPSPRVECVLAELKGVTCENREAVLDAFLDDGFLVPTFEQLAALQIEYEENV
DLNDVLVPKPFSQFWQPLLRGLHSQNFTQALLERMLSELPALGISGIRPTYILRWTVELIVANTKTGRNA
RRFSAGQWEARRGWRLFNCSASLDWPRMVESCLGSPCWASPQLLRIIFKAMGQGLPDEEQEKLLRICSIY
TQSGENSLVQEGSEASPIGKSPYTLDSLYWSVKPASSSFGSEAKAQQQEEQGSVNDVKEEEKEEKEVLPD
QVEEEEENDDQEEEEEDEDDEDDEEEDRMEVGPFSTGQESPTAENARLLAQKRGALQGSAWQVSSEDVRW
DTFPLGRMPGQTEDPAELMLENYDTMYLLDQPVLEQRLEPSTCKTDTLGLSCGVGSGNCSNSSSSNFEGL
LWSQGQLHGLKTGLQLF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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