NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS55398.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55398.1 Public Homo sapiens X LANCL3 24 110 108 CCDS HistoryNCBI Gene:347404Re-query CCDS DB by CCDS ID:55398.1Re-query CCDS DB by GeneID:347404See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55398.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000378619.4 ENSP00000367882.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000378619.4Link to Ensembl Protein Viewer:ENSP00000367882.4Re-query CCDS DB by Nucleotide ID:ENST00000378619Re-query CCDS DB by Protein ID:ENSP00000367882
Original member Current member NCBI NM_001170331.2 NP_001163802.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001170331.2Link to Protein Sequence:NP_001163802.1Re-query CCDS DB by Nucleotide ID:NM_001170331Re-query CCDS DB by Protein ID:NP_001163802Link to BLAST:NP_001163802.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001163802.1 420 Q6ZV70-1 420 100% 0 0

Chromosomal Locations for CCDS 55398.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 37571871 37572443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 37655688 37655811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 37659462 37659659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 37667282 37667489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 37675654 37675813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1263 nt):
ATGGACACCAAGCGCTGCTTCGCCAATCGCTTCGATGACTACCAGGGCAGCCTGCTGGCGGGCCAGTGTG
AGGAGGCGGTGGCGCCCTTGGTCACCGCCACCATCGAGCGCATCCTCCAGGAGCTTCCCCCACTCGGGGG
CGGCGCGGAGGCCCGAGGGGCGACGGCGGGGGCTAGCGCCTGCCAGGGGGGGCTTTATGGCGGCGTGGCC
GGAGTGGCGTATATGCTCTACCACGTCTCGCAGAGCCCGCTTTTCGCCACGGCCCGGGAACGCTACCTGC
GCTCGGCTAAGCGCCTCATCGACGCGTGCGCCCGCGCTGAGGAGTGGGGCGAACCGGACGCCGACACCCG
CGCCGCCTTCCTGCTCGGGGGCGCGGGCGTGTACGCCGTGGCCACGCTCGTATACCACGCCCTGGGCCGG
TCCGACTACGTGCAGCCGCTGGGCAAGTTCCGGGCTCTGTGTGCCGTCTGCGCGCCGGTCTCCTTCCTGG
AGTGCGGCTCCGACGAGCTGTTCGTGGGCCGCGCGGGTTACCTGTGTGCCGCGCTGGTGCTCAAGCAGAA
ACTCGCCCAGGAGGTGCTGACTCCAGCACAGATCAAGTCAATTTGTCAGGCAATTCTGGACTCTGGGAAG
CAGTATGCCATAAAGAAGAGGAAACCATTCCCCCTGATGTATTCTTACTATGGAACCGAATACTTGGGGG
CAGCTCACGGCTTGTCGTCTATTCTTCAGATGCTTCTTTCTTACCATGAGCATCTCAAGCCCTCAGATCG
GGAATTGGTATGGCAGAGCGTGGACTTTCTCATGGAACAGGAACAAAACTGCAACTGGCCACCTGAGCTC
GGCGAGACCATCGAGAGAGAGAATGAGCTGGTGCACTGGTGCCATGGCGCTCCAGGAATTGCCTATCTGT
TTGCCAAAGCTTATCTGGTTTCCAAGAAACCGCAGTACCTGGACACATGTATTCGGTGTGGGGAACTCAC
ATGGCAGAAAGGCCTGCTAAAGAAGGGGCCTGGGATTTGCCATGGAGTAGCCGGCAGTGCCTATGTCTTC
CTGCTGCTGTACCGGCTCACGGGAAACTCTAAATACATCTACCGAGCTCAAAGGTTTGCTCAATTCTTAT
TTACCGAGGAATTCAAGGCCGGTTCTCGGGTCCTTGAAAGTATATACAGCTTGTATGAAGGCTTCTCTGG
GACAGTGTGCTTTCTGATTGACCTGCTGCAGCCCAATCAGGCTGAATTCCCACTCTTCAGCGTCTTTGTT
TAG

Translation (420 aa):
MDTKRCFANRFDDYQGSLLAGQCEEAVAPLVTATIERILQELPPLGGGAEARGATAGASACQGGLYGGVA
GVAYMLYHVSQSPLFATARERYLRSAKRLIDACARAEEWGEPDADTRAAFLLGGAGVYAVATLVYHALGR
SDYVQPLGKFRALCAVCAPVSFLECGSDELFVGRAGYLCAALVLKQKLAQEVLTPAQIKSICQAILDSGK
QYAIKKRKPFPLMYSYYGTEYLGAAHGLSSILQMLLSYHEHLKPSDRELVWQSVDFLMEQEQNCNWPPEL
GETIERENELVHWCHGAPGIAYLFAKAYLVSKKPQYLDTCIRCGELTWQKGLLKKGPGICHGVAGSAYVF
LLLYRLTGNSKYIYRAQRFAQFLFTEEFKAGSRVLESIYSLYEGFSGTVCFLIDLLQPNQAEFPLFSVFV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH