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Report for CCDS55052.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55052.1 Public Homo sapiens 6 CEP85L 24 110 108 CCDS HistoryNCBI Gene:387119Re-query CCDS DB by CCDS ID:55052.1Re-query CCDS DB by GeneID:387119See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 55052.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000368488.9 ENSP00000357474.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000368488.9Link to Ensembl Protein Viewer:ENSP00000357474.5Re-query CCDS DB by Nucleotide ID:ENST00000368488Re-query CCDS DB by Protein ID:ENSP00000357474
Original member Current member NCBI NM_001178035.2 NP_001171506.1 Accepted alive Link to Nucleotide Sequence:NM_001178035.2Link to Protein Sequence:NP_001171506.1Re-query CCDS DB by Nucleotide ID:NM_001178035Re-query CCDS DB by Protein ID:NP_001171506Link to BLAST:NP_001171506.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001171506.1 808 Q5SZL2-4 808 100% 0 0

Chromosomal Locations for CCDS 55052.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 118465405 118465568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 118469072 118469303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 118470537 118470644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 118479871 118479921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 118480396 118480513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 118481779 118481933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 118483706 118483858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 118491686 118491865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 118511298 118511415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 118523802 118523920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 118565529 118566316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 118632453 118632611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 118652700 118652781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2427 nt):
ATGATTTGGAGAAATAATTGGAAGTCTACCACAGGGAGACTAAATGTAAAACTCCAATCAGATAAATTAC
AACACGGATGTGGCCCAGATTATTCATCAGCATGGCTACCTGCTAATGAATCATTGTGGCAGGCCACAAC
TGTTCCATCTAACCATCGAAATAACCATATCAGGAGACACAGTATAGCTTCTGACAGTGGAGACACTGGC
ATTGGAACTTCCTGTTCTGATAGCGTGGAAGATCATTCAACTTCAAGTGGCACATTATCTTTTAAGCCTA
GTCAATCATTGATTACTCTTCCTACTGCCCATGTGATGCCGTCTAATTCCAGCGCTTCAATTTCCAAACT
TAGGGAATCATTGACACCAGATGGCTCAAAATGGAGTACAAGCCTCATGCAAACATTGGGAAACCACAGT
AGGGGGGAGCAGGACTCTTCCCTAGACATGAAGGACTTCCGGCCACTTCGGAAATGGTCATCTTTATCCA
AACTCACTGCCCCGGATAACTGTGGCCAGGGTGGCACTGTATGCAGAGAAGAGTCAAGGAATGGTTTGGA
GAAGATAGGGAAGGCTAAGGCTTTAACATCACAACTGAGGACAATTGGGCCTAGCTGTTTACATGATAGT
ATGGAGATGCTTAGGTTAGAGGACAAGGAAATAAATAAAAAACGGTCATCAACTCTGGACTGCAAGTATA
AATTTGAGAGCTGTAGCAAGGAGGACTTTAGAGCCTCTTCCTCTACTCTTAGGAGACAGCCTGTAGACAT
GACATATAGTGCCTTACCTGAAAGCAAGCCCATTATGACAAGCTCAGAGGCTTTTGAACCTCCAAAATAT
TTAATGCTTGGTCAACAGGCAGTAGGTGGAGTTCCCATTCAGCCTTCCGTAAGGACTCAGATGTGGCTTA
CAGAGCAGCTGCGGACAAATCCTTTGGAAGGTAGAAATACAGAGGATTCTTACAGTTTAGCTCCTTGGCA
ACAGCAGCAAATTGAAGACTTTCGACAAGGAAGTGAAACACCAATGCAGGTTTTGACTGGATCATCTCGT
CAAAGTTATTCACCTGGCTATCAGGATTTCAGTAAGTGGGAATCAATGTTGAAAATAAAAGAAGGACTTC
TAAGGCAGAAAGAAATTGTAATCGATCGGCAGAAGCAACAAATTACCCACCTGCATGAGAGGATAAGGGA
TAATGAATTACGGGCTCAACATGCCATGTTAGGACATTATGTAAATTGTGAGGATTCTTATGTGGCTAGT
TTGCAGCCACAATATGAGAACACTTCACTCCAGACACCATTTTCAGAGGAATCAGTTTCCCATTCCCAAC
AAGGGGAATTTGAGCAAAAGCTTGCATCTACTGAGAAAGAAGTTTTACAGCTTAATGAGTTTCTCAAACA
AAGACTAAGCCTATTTAGTGAAGAGAAGAAGAAACTAGAGGAAAAACTTAAAACTAGAGATCGATACATC
AGTAGTCTGAAAAAGAAATGCCAGAAGGAATCTGAACAAAACAAAGAAAAGCAGAGAAGAATTGAGACCT
TGGAAAAGTATCTGGCTGATCTTCCAACTCTAGATGATGTACAGAGTCAGAGTCTACAGCTGCAGATTCT
GGAAGAAAAAAATAAGAATTTACAAGAGGCTTTGATAGATACAGAAAAAAAACTTGAAGAGATCAAAAAG
CAGTGTCAAGATAAAGAGACACAGTTAATATGCCAGAAAAAGAAAGAAAAGGAGTTAGTAACTACCGTTC
AGAGTTTGCAACAAAAAGTAGAAAGATGCCTTGAAGATGGAATCCGCCTTCCCATGTTAGATGCAAAACA
GCTTCAGAATGAAAATGATAATCTCAGACAACAAAATGAGACTGCTAGTAAGATAATAGACAGCCAACAA
GATGAGATTGACAGAATGATTTTAGAAATTCAGTCTATGCAAGGAAAGCTTTCTAAAGAGAAACTGACCA
CTCAAAAGATGATGGAAGAGCTGGAAAAGAAAGAAAGAAATGTACAGAGATTAACAAAAGCATTGCTTGA
AAACCAAAGACAAACAGATGAGACATGCTCTTTATTGGATCAGGGCCAGGAACCTGACCAATCTAGGCAG
CAGACAGTTCTTTCCAAACGGCCACTATTTGATTTGACTGTGATTGATCAGCTGTTCAAGGAAATGTCCT
GTTGTTTGTTTGACTTGAAAGCATTGTGTAGTATTCTTAATCAGCGTGCTCAGGGCAAGGAGCCTAATCT
TTCATTATTACTGGGAATAAGATCAATGAACTGTTCAGCTGAAGAGACTGAGAATGACCACAGCACAGAA
ACACTCACTAAAAAGCTGTCAGATGTGTGCCAGTTACGAAGAGACATTGATGAATTAAGGACTACAATAT
CAGACCGCTATGCTCAGGACATGGGAGACAACTGCATTACTCAGTGA

Translation (808 aa):
MIWRNNWKSTTGRLNVKLQSDKLQHGCGPDYSSAWLPANESLWQATTVPSNHRNNHIRRHSIASDSGDTG
IGTSCSDSVEDHSTSSGTLSFKPSQSLITLPTAHVMPSNSSASISKLRESLTPDGSKWSTSLMQTLGNHS
RGEQDSSLDMKDFRPLRKWSSLSKLTAPDNCGQGGTVCREESRNGLEKIGKAKALTSQLRTIGPSCLHDS
MEMLRLEDKEINKKRSSTLDCKYKFESCSKEDFRASSSTLRRQPVDMTYSALPESKPIMTSSEAFEPPKY
LMLGQQAVGGVPIQPSVRTQMWLTEQLRTNPLEGRNTEDSYSLAPWQQQQIEDFRQGSETPMQVLTGSSR
QSYSPGYQDFSKWESMLKIKEGLLRQKEIVIDRQKQQITHLHERIRDNELRAQHAMLGHYVNCEDSYVAS
LQPQYENTSLQTPFSEESVSHSQQGEFEQKLASTEKEVLQLNEFLKQRLSLFSEEKKKLEEKLKTRDRYI
SSLKKKCQKESEQNKEKQRRIETLEKYLADLPTLDDVQSQSLQLQILEEKNKNLQEALIDTEKKLEEIKK
QCQDKETQLICQKKKEKELVTTVQSLQQKVERCLEDGIRLPMLDAKQLQNENDNLRQQNETASKIIDSQQ
DEIDRMILEIQSMQGKLSKEKLTTQKMMEELEKKERNVQRLTKALLENQRQTDETCSLLDQGQEPDQSRQ
QTVLSKRPLFDLTVIDQLFKEMSCCLFDLKALCSILNQRAQGKEPNLSLLLGIRSMNCSAEETENDHSTE
TLTKKLSDVCQLRRDIDELRTTISDRYAQDMGDNCITQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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