CCDS Report for Consensus CDS

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Report for CCDS54838.1 (current version)

CCDS	Status	Species	Chrom.	Gene	CCDS Release	NCBI Annotation Release	Ensembl Annotation Release	Links
54838.1	Public	Homo sapiens	5	RAI14	24	110	108

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54838.1

Original	Current	Source	Nucleotide ID	Protein ID	MANE	Status in CCDS	Seq. Status	Links
		EBI	ENST00000506376.1	ENSP00000423854.1		Accepted	alive
		NCBI	NM_001145523.2	NP_001138995.1		Accepted	alive

RefSeq	Length	Related UniProtKB/SwissProt	Length	Identity	Gaps	Mismatches
NP_001138995.1	972	Q9P0K7-3	972	100%	0	0

Chromosomal Locations for CCDS 54838.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)

Genome Browser links:

Chromosome	Start	Stop
5	34687711	34687722
5	34757468	34757598
5	34795939	34796027
5	34803712	34803776
5	34807800	34807857
5	34808584	34808654
5	34811012	34811118
5	34811767	34811945
5	34812180	34812208
5	34813574	34813660
5	34814583	34814669
5	34818797	34818851
5	34821732	34821850
5	34822956	34824491
5	34826330	34826479
5	34829732	34829797
5	34830688	34830765

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.

Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2919 nt):
ATGGAAGCCAAGACCAATGAGTGGAACAAGAATGATGACCGGCTACTGCAGGCCGTGGAGAATGGAGATG CGGAGAAGGTGGCCTCACTGCTCGGCAAGAAGGGGGCCAGTGCCACCAAACACGACAGTGAGGGCAAGAC CGCTTTCCATCTTGCTGCTGCAAAAGGACACGTGGAATGCCTCAGGGTCATGATTACACATGGTGTGGAT GTGACAGCCCAAGATACTACCGGACACAGCGCCTTACATCTCGCAGCCAAGAACAGCCACCATGAATGCA TCAGGAAGCTGCTTCAGTCTAAATGCCCAGCCGAAAGTGTCGACAGCTCTGGGAAAACAGCTTTACATTA TGCAGCGGCTCAGGGCTGCCTTCAAGCTGTGCAGATTCTCTGCGAACACAAGAGCCCCATAAACCTCAAA GATTTGGATGGGAATATACCGCTGCTTCTTGCTGTACAAAATGGTCACAGTGAGATCTGTCACTTTCTCC TGGATCATGGAGCAGATGTCAATTCCAGGAACAAAAGTGGAAGAACTGCTCTCATGCTGGCCTGTGAGAT TGGCAGCTCTAACGCTGTGGAAGCCTTAATTAAAAAGGGTGCAGACCTAAACCTTGTAGATTCTCTTGGA TACAATGCCTTACATTATTCCAAACTCTCAGAAAATGCAGGAATTCAAAGCCTTCTATTATCAAAAATCT CTCAGGATGCTGATTTAAAGACCCCAACAAAACCAAAGCAGCATGACCAAGTCTCTAAAATAAGCTCAGA AAGAAGTGGAACTCCAAAAAAACGCAAAGCTCCACCACCTCCTATCAGTCCTACCCAGTTGAGTGATGTC TCTTCCCCAAGATCAATAACTTCGACTCCACTATCGGGAAAGGAATCGGTATTTTTTGCTGAACCACCCT TCAAGGCTGAGATCAGTTCTATACGAGAAAACAAAGACAGACTAAGTGACAGTACTACAGGTGCTGATAG CTTATTGGATATAAGTTCTGAAGCTGACCAACAAGATCTTCTCTCTCTATTGCAAGCAAAAGTTGCTTCC CTTACCTTACACAATAAGGAGTTACAAGATAAATTACAGGCCAAATCACCCAAGGAGGCGGAAGCAGACC TAAGCTTTGACTCATACCATTCCACCCAAACTGACTTGGGCCCATCCCTGGGAAAACCTGGTGAAACCTC TCCCCCAGACTCCAAATCATCTCCATCTGTCTTAATACATTCTTTAGGTAAATCCACTACTGACAATGAT GTCAGAATTCAGCAACTGCAAGAGATTTTGCAAGATCTACAGAAGAGATTAGAGAGCTCTGAAGCAGAGA GAAAACAGCTACAGGTCGAACTCCAATCCCGAAGGGCAGAACTGGTATGCTTAAACAACACTGAGATTTC AGAGAACAGCTCTGACCTCAGCCAGAAACTTAAAGAAACTCAGAGCAAATACGAGGAGGCTATGAAAGAA GTCCTTAGTGTGCAGAAGCAGATGAAACTCGGTCTTGTCTCACCTGAAAGCATGGATAATTATTCACATT TCCACGAGCTGAGGGTCACGGAAGAGGAAATAAATGTGCTAAAGCAGGATCTGCAGAATGCATTAGAAGA AAGTGAAAGAAATAAAGAGAAAGTGAGAGAGTTAGAGGAAAAACTGGTAGAGAGGGAGAAAGGTACAGTG ATTAAGCCACCTGTGGAAGAGTACGAGGAAATGAAAAGTTCATATTGCTCTGTTATTGAGAATATGAATA AGGAGAAAGCATTTTTGTTTGAGAAATACCAAGAAGCCCAAGAAGAAATCATGAAATTAAAAGACACACT AAAAAGTCAGATGACACAGGAAGCCAGTGATGAAGCTGAGGACATGAAAGAAGCCATGAATAGGATGATA GATGAACTCAATAAACAGGTGAGCGAGCTGTCACAGCTGTACAAAGAAGCCCAGGCTGAGCTGGAGGATT ACAGGAAGAGGAAATCTCTAGAGGATGTCACAGCTGAATATATCCATAAAGCAGAGCATGAGAAACTGAT GCAATTGACAAACGTGTCCAGGGCTAAAGCAGAAGATGCACTGTCTGAAATGAAGTCTCAGTATTCAAAA GTGTTGAATGAGTTGACCCAGCTCAAACAACTGGTGGATGCACAAAAAGAGAACTCTGTCTCTATCACAG AACATTTGCAAGTGATAACCACGCTGCGGACTGCAGCAAAAGAGATGGAAGAAAAAATAAGCAATCTTAA GGAACACCTTGCAAGCAAGGAAGTGGAAGTAGCAAAGCTGGAGAAACAACTCTTAGAAGAGAAAGCTGCT ATGACTGATGCAATGGTACCTCGGTCTTCCTATGAAAAACTCCAGTCATCCTTAGAGAGTGAAGTGAGTG TGTTGGCATCGAAATTAAAGGAATCTGTGAAAGAGAAAGAGAAGGTCCATTCAGAGGTTGTCCAGATTAG AAGTGAGGTCTCACAGGTGAAAAGAGAAAAGGAAAATATTCAGACTCTCTTGAAATCCAAAGAGCAAGAA GTAAATGAACTTCTGCAAAAATTCCAGCAAGCTCAGGAAGAACTTGCAGAAATGAAAAGATACGCTGAGA GCTCTTCAAAACTGGAGGAAGATAAAGATAAAAAGATAAATGAGATGTCGAAGGAAGTCACCAAATTGAA GGAGGCCTTGAACAGCCTCTCCCAGCTCTCCTACTCAACAAGCTCATCCAAAAGGCAGAGTCAGCAGCTG GAGGCGCTGCAGCAGCAAGTCAAACAGCTCCAGAACCAGCTGGCGGAATGCAAGAAACAACACCAGGAGG TCATATCAGTTTACAGAATGCATCTTCTGTATGCTGTGCAGGGCCAGATGGATGAAGATGTCCAGAAAGT ACTGAAGCAAATCCTTACCATGTGTAAAAACCAGTCTCAAAAGAAGTAA
Translation (972 aa):
MEAKTNEWNKNDDRLLQAVENGDAEKVASLLGKKGASATKHDSEGKTAFHLAAAKGHVECLRVMITHGVD VTAQDTTGHSALHLAAKNSHHECIRKLLQSKCPAESVDSSGKTALHYAAAQGCLQAVQILCEHKSPINLK DLDGNIPLLLAVQNGHSEICHFLLDHGADVNSRNKSGRTALMLACEIGSSNAVEALIKKGADLNLVDSLG YNALHYSKLSENAGIQSLLLSKISQDADLKTPTKPKQHDQVSKISSERSGTPKKRKAPPPPISPTQLSDV SSPRSITSTPLSGKESVFFAEPPFKAEISSIRENKDRLSDSTTGADSLLDISSEADQQDLLSLLQAKVAS LTLHNKELQDKLQAKSPKEAEADLSFDSYHSTQTDLGPSLGKPGETSPPDSKSSPSVLIHSLGKSTTDND VRIQQLQEILQDLQKRLESSEAERKQLQVELQSRRAELVCLNNTEISENSSDLSQKLKETQSKYEEAMKE VLSVQKQMKLGLVSPESMDNYSHFHELRVTEEEINVLKQDLQNALEESERNKEKVRELEEKLVEREKGTV IKPPVEEYEEMKSSYCSVIENMNKEKAFLFEKYQEAQEEIMKLKDTLKSQMTQEASDEAEDMKEAMNRMI DELNKQVSELSQLYKEAQAELEDYRKRKSLEDVTAEYIHKAEHEKLMQLTNVSRAKAEDALSEMKSQYSK VLNELTQLKQLVDAQKENSVSITEHLQVITTLRTAAKEMEEKISNLKEHLASKEVEVAKLEKQLLEEKAA MTDAMVPRSSYEKLQSSLESEVSVLASKLKESVKEKEKVHSEVVQIRSEVSQVKREKENIQTLLKSKEQE VNELLQKFQQAQEELAEMKRYAESSSKLEEDKDKKINEMSKEVTKLKEALNSLSQLSYSTSSSKRQSQQL EALQQQVKQLQNQLAECKKQHQEVISVYRMHLLYAVQGQMDEDVQKVLKQILTMCKNQSQKK

	Links Key
	Links to:	History report BLAST report Entrez Gene Nucleotide report Protein report
	Re-query CCDS DB by:	CCDS ID Gene ID Nucleotide ID Protein ID
	Genome Browser Links:	Ensembl Genome Browser NCBI Sequence Viewer UCSC Genome Browser VEGA Genome Browser

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