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Report for CCDS54710.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54710.1 Public Homo sapiens 4 ZFYVE28 24 110 108 CCDS HistoryNCBI Gene:57732Re-query CCDS DB by CCDS ID:54710.1Re-query CCDS DB by GeneID:57732See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54710.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000509171.5 ENSP00000422638.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000509171.5Link to Ensembl Protein Viewer:ENSP00000422638.1Re-query CCDS DB by Nucleotide ID:ENST00000509171Re-query CCDS DB by Protein ID:ENSP00000422638
Original member Current member NCBI NM_001172658.3 NP_001166129.1 Accepted alive Link to Nucleotide Sequence:NM_001172658.3Link to Protein Sequence:NP_001166129.1Re-query CCDS DB by Nucleotide ID:NM_001172658Re-query CCDS DB by Protein ID:NP_001166129Link to BLAST:NP_001166129.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001166129.1 172 Q9HCC9-7 172 100% 0 0

Chromosomal Locations for CCDS 54710.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 2329094 2329142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2337407 2337496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2339453 2339655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2341478 2341615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2418285 2418323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (519 nt):
ATGATGAACAGGTTCCGAAAGTGGCTCTACAAACCCAAGGACAATGTGTTGAACATCATTAACCAGATCA
TGGATGAGTGCATCCCCCAGGACCGCGCCCCCAGAGATTTCTGCGTCAAGTTCCCTGAGGAGATCCGGCA
CGACAACCTGGCCGGCCAGCTGTGGTTCGGTGCCGAGTGCCTGGCCGCCGGCTCCATCATCATGAACCGG
GAGCTGGAGAGCATGGCCATGCGCCCGCTGGCCAAGGAGCTGACGCGCAGCCTGGAGGACGTGCGGGGCG
CCCTCCGTGACCAGGCGCTGCGGGACCTGAACACCTACACAGAGAAGATGAGGGAAGCGCTGAGGCACTT
CGACGTCCTGTTCGCAGAGTTTGAGCTCAGCTACGTCTCGGCCATGGTGCCTGTGAAGTCCCCCAGGGAG
TACTACGTGCAGCAGGAGGTCATCGTGCTCTTCTGCGAGACGGTGGAGAGAAATGGAAAAGGTGTTCTAA
AATTCATGTGGAACTGCAATGGGCCCTAA

Translation (172 aa):
MMNRFRKWLYKPKDNVLNIINQIMDECIPQDRAPRDFCVKFPEEIRHDNLAGQLWFGAECLAAGSIIMNR
ELESMAMRPLAKELTRSLEDVRGALRDQALRDLNTYTEKMREALRHFDVLFAEFELSYVSAMVPVKSPRE
YYVQQEVIVLFCETVERNGKGVLKFMWNCNGP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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