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Report for CCDS54708.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54708.1 Public Homo sapiens 4 ZFYVE28 24 110 108 CCDS HistoryNCBI Gene:57732Re-query CCDS DB by CCDS ID:54708.1Re-query CCDS DB by GeneID:57732See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54708.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000515312.5 ENSP00000426299.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000515312.5Link to Ensembl Protein Viewer:ENSP00000426299.1Re-query CCDS DB by Nucleotide ID:ENST00000515312Re-query CCDS DB by Protein ID:ENSP00000426299
Original member Current member NCBI NM_001172659.2 NP_001166130.1 Accepted alive Link to Nucleotide Sequence:NM_001172659.2Link to Protein Sequence:NP_001166130.1Re-query CCDS DB by Nucleotide ID:NM_001172659Re-query CCDS DB by Protein ID:NP_001166130Link to BLAST:NP_001166130.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001166130.1 817 Q9HCC9-3 817 100% 0 0

Chromosomal Locations for CCDS 54708.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 2270725 2270856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2271311 2271414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2271675 2271779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2273173 2273289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2274062 2274216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2304289 2305536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2320170 2320271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2335705 2335794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2337407 2337496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2339453 2339655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2341478 2341585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2454 nt):
ATGGATGAGTGCATCCCCCAGGACCGCGCCCCCAGAGATTTCTGCGTCAAGTTCCCTGAGGAGATCCGGC
ACGACAACCTGGCCGGCCAGCTGTGGTTCGGTGCCGAGTGCCTGGCCGCCGGCTCCATCATCATGAACCG
GGAGCTGGAGAGCATGGCCATGCGCCCGCTGGCCAAGGAGCTGACGCGCAGCCTGGAGGACGTGCGGGGC
GCCCTCCGTGACCAGGCGCTGCGGGACCTGAACACCTACACAGAGAAGATGAGGGAAGCGCTGAGGCACT
TCGACGTCCTGTTCGCAGAGTTTGAGCTCAGCTACGTCTCGGCCATGGTGCCTGTGAAGTCCCCCAGGGA
GTACTACGTGCAGCAGGAGGTCATCGTGCTCTTCTGCGAGACGGTGGAGAGGGCCCTGGACTTCGGGTAC
CTGACTCAGGACATGATTGATGACTACGAGCCGGCCCTCATGTTCAGCATCCCCAGGCTGGCCATCGTGT
GTGGCCTCGTGGTCTATGCGGACGGACCTCTGAACTTGGACCGCAAGGTGGAAGACATGTCCGAGCTGTT
CCGGCCCTTCCACACGTTGCTGCGGAAAATAAGGGATTTGCTGCAGACGCTGACGGAGGAGGAGCTGCAC
ACGCTGGAACGGAACCTCTGCATTTCCCAAGACGTGGAGTTCCCCATCCGCGCAGACGTGCAGGGACCCG
CTGCCCTGGCGCCTGCCCTCTCTGCCCCTCTCCCCCCTGAGGGGCCACTCTCAGCTAAGGCCAAAGACCC
GGATGCAGAGCTGGCCTGCTCCATGCAGTACGACGACCAGGAGCTGGAGCAGCTCAGCCGCATGGTCCAC
AGGGCGGGGGACGAGATGTCCTCTTTGCTTTCACCGCCCATTGCCTGCCAGTCCCCAGCTCACAGGCCAG
GAGCGGAGGGCAGCCCAGGCGGGGAGGCCTCTCCAGGTAGACCGCGCCTGCGGTCAGGCAGTGACGAGGA
GGAGCGCGTGTTCTTCATGGATGACGTGGAGGGGACGGCAGAAGCCCTGGCCAGGCCCGAGTCCCCAGCT
GGCCCATTTGGGTGGGCAGGCAGTACCTGGGCCGACCCCCAGGAGAAAGGGCAGGGTGGGCCAGGCGGAG
CGGCGGGGATCAGCTTGCCCGCCTCGGAAAAGGAGGAGGACTTGAGCAACAACAATCTCGAGGCCGAGGG
CACAGATGGGGCCAGCCTCGCGGGCACCAGCTCCTGCAGCTGCCTGGACTCGCGGCTGCACCTGGACGGC
TGGGAGGTGGGTGCGGATGACGCAGAGACGGCTGAGATGATCGCCCACCGGACAGGGGGCATGAAGCTCT
CAGCCACGGTCATCTTCAACCCCAAATCGCCCACTTCCCTGGACTCTGCGGTCGCCACCCAGGAGGCCGC
CTCGGAGCCCGTGGCCGAGGGGATGGATGGCGGCCCCCACAAGCTTAGCACTGGGGCCACCAACTGCCTT
CTGCATTCCTGCGTGTGCTGTGGGAGCTGCGGGGACAGCAGGGAGGACGTGGTGGAGCGTCTGCGGGAGA
AGTGCAGCCCGGGAGGCGTCATTGGTGCCTCGTACGCTGCCGGCTTAGCCAAGGCCAGCGACAGGGCCCC
TGAGAGACAGGAGGAGGCGCCCCCACCCTCAGAAGATGCCTCCAACGGGCGGGAGCCCAAAGCCCCCACT
TCCGACAAGTGCCTGCCTCACACCTCAGGTTCCCAGGTGGACACAGCGAGTGGGCTGCAAGGAGAGGCTG
GGGTTGCAGGTCAGCAGGAGCCAGAGGCCAGAGAGCTGCATGCTGGGAGCCCCTCGGCTCACGAGGCGCC
TCAGGCCCTGTCGGGCTCCAGCAGCTCCACAGCTGGGTCCTGCTCCTCAGACAAGATGGGGCCAGAGGCG
GCCCCAGCAGCCACGCATGCTGCCCCACAGGCCACAAGAGAGAAGATCCGGTCCAGGTTCCACGGCAGCC
ACGACCTCATCCACCGCCTGTTCGTCTGCATTTCAGGTGTGGCTGACCAGCTGCAGACGAACTATGCCAG
TGACCTGAGAAGTATTCTTAAAACACTGTTTGAGGTCATGGCCACCAAGCCTGAAACAGACGACAAGGAA
AAGTTAAGGAAGGTCACCCAGACTCTGCGGAGTGCGGCCTTGGAGGACTGTGCACTGTGCCAGGAGACCC
TGTCATCCTCTGAACTGGCAGCCAAGACCCGCGATGGGGACTTTGAAGACCCCCCGGAGTGGGTGCCAGA
CGAGGCCTGTGGCTTCTGCACGGCGTGCAAAGCACCCTTCACCGTCATCCGCCGGAAGCACCACTGCCGC
AGCTGTGGGAAGATCTTCTGCTCGCGCTGCTCCTCGCACTCAGCACCGCTGCCCCGCTACGGGCAGGTGA
AGCCGGTCCGAGTGTGCACCCACTGCTACATGTTCCATGTCACGCCCTTCTACAGCGACAAGGCCGGCCT
GTGA

Translation (817 aa):
MDECIPQDRAPRDFCVKFPEEIRHDNLAGQLWFGAECLAAGSIIMNRELESMAMRPLAKELTRSLEDVRG
ALRDQALRDLNTYTEKMREALRHFDVLFAEFELSYVSAMVPVKSPREYYVQQEVIVLFCETVERALDFGY
LTQDMIDDYEPALMFSIPRLAIVCGLVVYADGPLNLDRKVEDMSELFRPFHTLLRKIRDLLQTLTEEELH
TLERNLCISQDVEFPIRADVQGPAALAPALSAPLPPEGPLSAKAKDPDAELACSMQYDDQELEQLSRMVH
RAGDEMSSLLSPPIACQSPAHRPGAEGSPGGEASPGRPRLRSGSDEEERVFFMDDVEGTAEALARPESPA
GPFGWAGSTWADPQEKGQGGPGGAAGISLPASEKEEDLSNNNLEAEGTDGASLAGTSSCSCLDSRLHLDG
WEVGADDAETAEMIAHRTGGMKLSATVIFNPKSPTSLDSAVATQEAASEPVAEGMDGGPHKLSTGATNCL
LHSCVCCGSCGDSREDVVERLREKCSPGGVIGASYAAGLAKASDRAPERQEEAPPPSEDASNGREPKAPT
SDKCLPHTSGSQVDTASGLQGEAGVAGQQEPEARELHAGSPSAHEAPQALSGSSSSTAGSCSSDKMGPEA
APAATHAAPQATREKIRSRFHGSHDLIHRLFVCISGVADQLQTNYASDLRSILKTLFEVMATKPETDDKE
KLRKVTQTLRSAALEDCALCQETLSSSELAAKTRDGDFEDPPEWVPDEACGFCTACKAPFTVIRRKHHCR
SCGKIFCSRCSSHSAPLPRYGQVKPVRVCTHCYMFHVTPFYSDKAGL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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