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Report for CCDS54428.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54428.1 Public Homo sapiens 2 C2CD6 24 110 108 CCDS HistoryNCBI Gene:151254Re-query CCDS DB by CCDS ID:54428.1Re-query CCDS DB by GeneID:151254See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54428.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000439802.5 ENSP00000400672.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000439802.5Link to Ensembl Protein Viewer:ENSP00000400672.1Re-query CCDS DB by Nucleotide ID:ENST00000439802Re-query CCDS DB by Protein ID:ENSP00000400672
Original member Current member NCBI NM_001168216.2 NP_001161688.1 Accepted alive Link to Nucleotide Sequence:NM_001168216.2Link to Protein Sequence:NP_001161688.1Re-query CCDS DB by Nucleotide ID:NM_001168216Re-query CCDS DB by Protein ID:NP_001161688Link to BLAST:NP_001161688.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001161688.1 395 Q53TS8-2 395 100% 0 0

Chromosomal Locations for CCDS 54428.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 201495944 201495969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 201545543 201545621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 201547505 201547610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 201565729 201565872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 201571941 201572020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 201574209 201574277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 201575282 201575326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 201582095 201582217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 201601739 201601884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 201603224 201603275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 201604611 201604697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 201618900 201619130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1188 nt):
ATGGAGCCACCCCAAGAGACAAATAGGCCTTTCAGCACACTTGATAACCGCAGCGGGCAGGTCCAAGTCC
TGTCCGCCACCCCGCTATTGCAGAGGAATCCCTACAGCAGCCCGGATATCATGCACATTAAAGGGTCGGA
GGCTTCTTCGGTCCCTTACGCCCTGAACCAGGGCACGACGGCCCTGCCTAAGAACAAGAACCAGGAGGGC
ACCGGGCACCGGCTGCTGAACATGCTGAGAAAAACTCTTAAAGAGTCTGATAGTGAAGAACTGGAAATAA
CACAGGAGACGCCAAATTTGGTGCCATTTGGGGATGTGGTTGGCTGCCTGGGCATTCATATAAAGAACTG
CAGACATTTTATGCCTAAGATCAGTTTACAACATTATGCTAATTTATTCATTCGCATCTCTATAAACAAA
GCTGTGAAATGTACAAAAATGTGTAGCTTGCTATCCAAAAACGATGAGAAGAACACTGTAATTAAGTTCG
ATGAAGTGAAGTATTTTTCTGTACAGGTTCCCAGACGTTATGATGATAAGCGGAATAATATTTTATTGGA
ACTCATACAATATGACAATAGAGAAAAACGTGCTTTCTTGTTAGGGAGTGTTCAGATACATCTTTATGAG
GTAATTCAGAAAGGGTGCTTCATTGAAGAGGTCCAAGTGTTGCATGGAAACATATTTGTCTGCAGGCTGG
AGGTGGAATTTATGTTCTCCTATGGAAACTTTGGTTATGGATTTTCACATCAGTTAAAACCTCTTCAGAA
AATTACTGAGCCATCCATGTTTATGAATCTTGCACCACCTCCAGAAAGAACAGATCCCGTGACAAAAGTT
ATTACACCACAGACAGTAGAATATCCAGCATTCTTATCCCCAGACCTGAATGTTACTGTTGGGACTCCAG
CTGTGCAATCCTCCAACCAGCCATCTGTAGTGCGACTTGAAAAACTTCAGCAACAACCCCGGGAAAGGCT
GGAAAAGATGAAAAAAGAATATAGAAATCTGAATACATGGATAGATAAAGCTAACTATTTAGAAAGCATT
CTAATGCCAAAATTGGAACATAAGGATTCTGAGGAAACTAATATAGATGAGGCATCTGAAAACACGAAAA
GTAATCATCCTGAAGAGGAGCTTGAAAATATTGTAGGAGTAGGTGGCTTTTTCACCAAAAGAATATAA

Translation (395 aa):
MEPPQETNRPFSTLDNRSGQVQVLSATPLLQRNPYSSPDIMHIKGSEASSVPYALNQGTTALPKNKNQEG
TGHRLLNMLRKTLKESDSEELEITQETPNLVPFGDVVGCLGIHIKNCRHFMPKISLQHYANLFIRISINK
AVKCTKMCSLLSKNDEKNTVIKFDEVKYFSVQVPRRYDDKRNNILLELIQYDNREKRAFLLGSVQIHLYE
VIQKGCFIEEVQVLHGNIFVCRLEVEFMFSYGNFGYGFSHQLKPLQKITEPSMFMNLAPPPERTDPVTKV
ITPQTVEYPAFLSPDLNVTVGTPAVQSSNQPSVVRLEKLQQQPRERLEKMKKEYRNLNTWIDKANYLESI
LMPKLEHKDSEETNIDEASENTKSNHPEEELENIVGVGGFFTKRI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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