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Report for CCDS54253.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54253.1 Public Homo sapiens 19 SBSN 24 110 108 CCDS HistoryNCBI Gene:374897Re-query CCDS DB by CCDS ID:54253.1Re-query CCDS DB by GeneID:374897See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54253.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000452271.7 ENSP00000430242.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000452271.7Link to Ensembl Protein Viewer:ENSP00000430242.1Re-query CCDS DB by Nucleotide ID:ENST00000452271Re-query CCDS DB by Protein ID:ENSP00000430242
Original member Current member NCBI NM_001166034.2 NP_001159506.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001166034.2Link to Protein Sequence:NP_001159506.1Re-query CCDS DB by Nucleotide ID:NM_001166034Re-query CCDS DB by Protein ID:NP_001159506Link to BLAST:NP_001159506.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001159506.1 590 Q6UWP8-1 590 100% 0 0

Chromosomal Locations for CCDS 54253.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 35523510 35523533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 35524711 35524755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 35524859 35524924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 35526644 35528281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1773 nt):
ATGCATCTTGCACGTCTGGTCGGCTCCTGCTCCCTCCTTCTGCTACTGGGGGCCCTGTCTGGATGGGCGG
CCAGCGATGACCCCATTGAGAAGGTCATTGAAGGGATCAACCGAGGGCTGAGCAATGCAGAGAGAGAGGT
GGGCAAGGCCCTGGATGGCATCAACAGTGGAATCACGCATGCCGGAAGGGAAGTGGAGAAGGTTTTCAAC
GGACTTAGCAACATGGGGAGCCACACCGGCAAGGAGTTGGACAAAGGCGTCCAGGGGCTCAACCACGGCA
TGGACAAGGTTGCCCATGAGATCAACCATGGTATTGGACAAGCAGGAAAGGAAGCAGAGAAGCTTGGCCA
TGGGGTCAACAACGCTGCTGGACAGGTTGGGAAGGAGGCAGACAAACTGATCCATCATGGGGTCCATCAC
GGGGCCAACCAGGCGGGAAGTGAGGCAGGGAAGTTTGGCCAGGGAGTCGACAATGCTGCAGGGCAGGCTG
GAAATGAGGCTGGGAGGTTTGGCCAGGGAGTCCACCATGCTGCAGGGCAGGCCGGAAATGAGGCTGGGAG
GTTTGGCCAGGGAGTCCACCATGCTGCAGGGCAGGCCGGAAATGAGGCTGGGAGATTTGGCCAGGGGGCC
CACCATGGTCTCAGTGAGGGCTGGAAGGAGACAGAGAAGTTTGGCCAGGGGATCCACCATGCTGCCGGTC
AGGTTGGGAAGGAGGCAGAGAAGTTTGGCCAGGGGGCCCACCATGCTGCGGGGCAGGCCGGAAATGAGGC
AGGGAGATTTGGCCAGGGGGTCCACCATGGTCTCAGTGAGGGCTGGAAGGAGACAGAGAAGTTTGGCCAG
GGGGTCCACCATACTGCTGGTCAGGTTGGGAAGGAGGCAGAGAAGTTTGGCCAGGGGGCCCACCATGCTG
CGGGGCAGGCCGGAAATGAGGCAGGGAGATTTGGCCAGGGGGCCCACCATGCTGCGGGGCAGGCCGGAAA
TGAGGCTGGGAGGTTTGGCCAGGGGGTCCACCATGGTCTCAGTGAGGGCTGGAAGGAGACAGAGAAGTTT
GGCCAGGGGGTCCACCATGCTGCCAGTCAGTTTGGGAAGGAAACAGAGAAGCTCGGCCATGGGGTCCACC
ATGGGGTTAATGAGGCCTGGAAGGAAGCAGAGAAGTTTGGCCAGGGTGTCCACCATGCTGCCTCGCAGGT
GGGGAAGGAGGAAGACAGAGTGGTCCAAGGCCTCCATCATGGCGTTAGTCAGGCTGGAAGGGAGGCGGGG
CAGTTTGGCCACGACATTCACCACACAGCAGGGCAGGCTGGGAAAGAGGGAGACATAGCAGTTCATGGTG
TCCAACCTGGGGTCCACGAGGCCGGGAAGGAGGCAGGGCAGTTTGGCCAGGGAGTTCACCATACCCTTGA
ACAGGCCGGGAAGGAAGCAGACAAAGCGGTCCAAGGGTTCCACACTGGGGTCCACCAGGCTGGGAAGGAA
GCAGAGAAACTTGGCCAAGGGGTCAACCATGCTGCTGACCAGGCTGGAAAGGAAGTGGAGAAGCTTGGCC
AAGGTGCCCACCATGCTGCTGGCCAGGCCGGGAAGGAGCTGCAGAATGCTCATAATGGGGTCAACCAAGC
CAGCAAGGAGGCCAACCAGCTGCTGAATGGCAACCATCAAAGCGGATCTTCCAGCCATCAAGGAGGGGCC
ACAACCACGCCGTTAGCCTCTGGGGCCTCGGTCAACACGCCTTTCATCAACCTTCCCGCCCTGTGGAGGA
GCGTCGCCAACATCATGCCCTAA

Translation (590 aa):
MHLARLVGSCSLLLLLGALSGWAASDDPIEKVIEGINRGLSNAEREVGKALDGINSGITHAGREVEKVFN
GLSNMGSHTGKELDKGVQGLNHGMDKVAHEINHGIGQAGKEAEKLGHGVNNAAGQVGKEADKLIHHGVHH
GANQAGSEAGKFGQGVDNAAGQAGNEAGRFGQGVHHAAGQAGNEAGRFGQGVHHAAGQAGNEAGRFGQGA
HHGLSEGWKETEKFGQGIHHAAGQVGKEAEKFGQGAHHAAGQAGNEAGRFGQGVHHGLSEGWKETEKFGQ
GVHHTAGQVGKEAEKFGQGAHHAAGQAGNEAGRFGQGAHHAAGQAGNEAGRFGQGVHHGLSEGWKETEKF
GQGVHHAASQFGKETEKLGHGVHHGVNEAWKEAEKFGQGVHHAASQVGKEEDRVVQGLHHGVSQAGREAG
QFGHDIHHTAGQAGKEGDIAVHGVQPGVHEAGKEAGQFGQGVHHTLEQAGKEADKAVQGFHTGVHQAGKE
AEKLGQGVNHAADQAGKEVEKLGQGAHHAAGQAGKELQNAHNGVNQASKEANQLLNGNHQSGSSSHQGGA
TTTPLASGASVNTPFINLPALWRSVANIMP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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