NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS54194.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54194.1 Public Homo sapiens 18 RBFA 24 110 108 CCDS HistoryNCBI Gene:79863Re-query CCDS DB by CCDS ID:54194.1Re-query CCDS DB by GeneID:79863See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54194.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000262197.7 ENSP00000262197.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000262197.7Link to Ensembl Protein Viewer:ENSP00000262197.6Re-query CCDS DB by Nucleotide ID:ENST00000262197Re-query CCDS DB by Protein ID:ENSP00000262197
Original member Current member NCBI NM_001171967.2 NP_001165438.1 Accepted alive Link to Nucleotide Sequence:NM_001171967.2Link to Protein Sequence:NP_001165438.1Re-query CCDS DB by Nucleotide ID:NM_001171967Re-query CCDS DB by Protein ID:NP_001165438Link to BLAST:NP_001165438.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001165438.1 242 Q8N0V3-2 242 100% 0 0

Chromosomal Locations for CCDS 54194.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 80034496 80034653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 80036668 80036710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 80037330 80037506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 80038505 80038617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 80044212 80044285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 80045774 80045937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (729 nt):
ATGTGGGCTGCGGCGGGCGGGCTGTGGCGCTCCCGCGCGGGTCTCCGGGCCCTGTTCCGTAGCCGCGATG
CTGCGCTATTTCCAGGCTGCGAGCGGGGACTTCACTGCTCTGCTGTCTCCTGCAAGAACTGGCTCAAGAA
ATTTGCCTCGAAAACCAAAAAAAAGGTTTGGTATGAAAGTCCTTCCTTGGGTTCTCACTCGACTTACAAA
CCATCCAAGTTGGAATTCCTCATGAGGAGCACCTCAAAGAAAACCAGGAAGGAAGACCATGCGCGCCTGA
GGGCCCTGAACGGCCTCCTCTATAAGGCACTGACAGACCTGCTGTGTACCCCTGAAGTGAGTCAGGAGCT
GTATGACCTTAACGTGGAGCTCTCCAAGGTTTCCCTGACTCCAGACTTCTCAGCCTGCCGAGCGTACTGG
AAGACAACGCTCTCTGCTGAGCAGAACGCACACATGGAGGCTGTCCTGCAGAGAAGTGCCGCGCACATGA
GCTTGATCAGTTACTGGCAGTCGCAGACTTTGGACCCCGGGATGAAAGAGACAACTTTGTACAAAATGAT
TTCAGGGACCCTGATGCCCCACAACCCTGCGGCACCACAGAGCCGACCACAAGCTCCAGTCTGTGTGGGA
TCGATCATGAGGCGCTCAACAAGCAGATTATGGAGTACAAAAGGAGGAAAGATAAAGGGCTCGGGGGCCT
GGTGTGGCAGGGGCAGGTGGCTGAGCTGA

Translation (242 aa):
MWAAAGGLWRSRAGLRALFRSRDAALFPGCERGLHCSAVSCKNWLKKFASKTKKKVWYESPSLGSHSTYK
PSKLEFLMRSTSKKTRKEDHARLRALNGLLYKALTDLLCTPEVSQELYDLNVELSKVSLTPDFSACRAYW
KTTLSAEQNAHMEAVLQRSAAHMSLISYWQSQTLDPGMKETTLYKMISGTLMPHNPAAPQSRPQAPVCVG
SIMRRSTSRLWSTKGGKIKGSGAWCGRGRWLS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH