NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS5405.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5405.1 Public Homo sapiens 7 HOXA4 24 110 108 CCDS HistoryNCBI Gene:3201Re-query CCDS DB by CCDS ID:5405.1Re-query CCDS DB by GeneID:3201See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5405.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000360046.10 ENSP00000353151.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000360046.10Link to Ensembl Protein Viewer:ENSP00000353151.5Re-query CCDS DB by Nucleotide ID:ENST00000360046Re-query CCDS DB by Protein ID:ENSP00000353151
Original member Current member EBI ENST00000428284.2 ENSP00000408845.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000428284.2Link to Ensembl Protein Viewer:ENSP00000408845.2Re-query CCDS DB by Nucleotide ID:ENST00000428284Re-query CCDS DB by Protein ID:ENSP00000408845
Original member Current member EBI ENST00000610970.1 ENSP00000479166.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000610970.1Link to Ensembl Protein Viewer:ENSP00000479166.1Re-query CCDS DB by Nucleotide ID:ENST00000610970Re-query CCDS DB by Protein ID:ENSP00000479166
Original member Current member NCBI NM_002141.5 NP_002132.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002141.5Link to Protein Sequence:NP_002132.3Re-query CCDS DB by Nucleotide ID:NM_002141Re-query CCDS DB by Protein ID:NP_002132Link to BLAST:NP_002132.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_002132.3 320 Q00056 320 100% 0 0

Chromosomal Locations for CCDS 5405.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 27129225 27129571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27130118 27130733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (963 nt):
ATGACCATGAGCTCGTTTTTGATAAACTCCAACTACATCGAGCCCAAGTTCCCTCCCTTCGAGGAGTACG
CGCAGCACAGCGGCTCGGGCGGCGCAGACGGCGGCCCGGGCGGGGGCCCCGGCTACCAGCAGCCCCCAGC
GCCCCCGACCCAGCACCTGCCGCTGCAGCAGCCCCAGCTCCCTCACGCGGGCGGCGGCCGAGAGCCCACT
GCCTCCTACTACGCGCCGCGGACCGCCCGCGAGCCCGCCTACCCTGCTGCCGCGCTGTACCCCGCGCATG
GGGCCGCGGACACCGCCTACCCCTATGGCTACCGCGGCGGCGCCAGCCCCGGGCGGCCGCCCCAGCCCGA
GCAGCCCCCGGCGCAAGCCAAGGGCCCAGCGCACGGCCTGCATGCGAGCCACGTCCTGCAGCCCCAGCTG
CCGCCGCCCCTGCAGCCTCGCGCCGTGCCCCCAGCGGCCCCGCGGCGCTGCGAGGCGGCCCCCGCCACCC
CAGGCGTCCCGGCAGGGGGCAGCGCCCCCGCGTGCCCGCTGCTCTTGGCCGACAAGAGCCCGCTGGGCCT
GAAGGGCAAGGAGCCCGTGGTGTACCCCTGGATGAAGAAGATCCATGTCAGCGCCGTTAACCCCAGTTAT
AACGGAGGGGAGCCTAAGCGCTCTCGAACCGCCTACACCCGGCAGCAGGTCTTGGAGCTGGAGAAGGAGT
TCCACTTCAATCGATACCTGACCCGGCGGCGCCGCATCGAGATCGCCCACACGCTCTGTTTGTCTGAGCG
CCAGGTCAAGATCTGGTTTCAGAACCGGAGGATGAAGTGGAAGAAAGACCACAAACTGCCCAACACCAAG
ATGCGATCCTCCAATTCGGCCTCGGCCTCTGCCGGCCCACCAGGGAAAGCACAAACTCAGAGCCCACACC
TCCATCCCCACCCCCACCCGAGCACCTCCACACCCGTTCCCTCCTCCATATAA

Translation (320 aa):
MTMSSFLINSNYIEPKFPPFEEYAQHSGSGGADGGPGGGPGYQQPPAPPTQHLPLQQPQLPHAGGGREPT
ASYYAPRTAREPAYPAAALYPAHGAADTAYPYGYRGGASPGRPPQPEQPPAQAKGPAHGLHASHVLQPQL
PPPLQPRAVPPAAPRRCEAAPATPGVPAGGSAPACPLLLADKSPLGLKGKEPVVYPWMKKIHVSAVNPSY
NGGEPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQVKIWFQNRRMKWKKDHKLPNTK
MRSSNSASASAGPPGKAQTQSPHLHPHPHPSTSTPVPSSI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH