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Report for CCDS53969.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53969.1 Public Homo sapiens 15 C15orf40 24 110 108 CCDS HistoryNCBI Gene:123207Re-query CCDS DB by CCDS ID:53969.1Re-query CCDS DB by GeneID:123207See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53969.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000451195.7 ENSP00000403987.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000451195.7Link to Ensembl Protein Viewer:ENSP00000403987.3Re-query CCDS DB by Nucleotide ID:ENST00000451195Re-query CCDS DB by Protein ID:ENSP00000403987
Original member Current member NCBI NM_001160115.2 NP_001153587.1 Accepted alive Link to Nucleotide Sequence:NM_001160115.2Link to Protein Sequence:NP_001153587.1Re-query CCDS DB by Nucleotide ID:NM_001160115Re-query CCDS DB by Protein ID:NP_001153587Link to BLAST:NP_001153587.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001153587.1 167 Q8WUR7-3 167 100% 0 0

Chromosomal Locations for CCDS 53969.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 82990633 82990655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 82991932 82992046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83008548 83008675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83010237 83010363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83011497 83011607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (504 nt):
ATGCTGCGGCTCCGCAGCGGGCTGAGGCACCTTCGGGCAACACCCAATACTCGGGGCTCCGCTCGGCTTC
TTTGCGCCGAGATGCCTAAGAAGGCTGGTGCGACGACCAAGGGTAAAAGCCAGAGCAAGGAACCAGAGAG
ACCACTTCCTCCCTTAGGTCCTGTGGCAGTTGATCCTAAAGGATGCGTCACCATAGCCATCCATGCAAAA
CCTGGCTCCAAACAAAATGCTGTAACAGATTTGACAGCAGAGGCTGTAAATGTAGCTATTGCAGCACCTC
CATCAGAGGGAGAGGCTAATGCTGAGCTCTGTCGGTATCTTTCCAAGGTCCTAGAACTCAGGAAGAGTGA
TGTGGTTTTGGATAAGACAGGATCTTGCTACATTGCCCAGGCTGGCCTCGAACTCCTGGCTTCAAGTGAT
CTTCCCGCCTCGGCCTCCCAGAGTGCTGGGATAACAGGTGTGAGCCACCATACCCAACCAGCTTTATTAC
TGATTTCCCTCTAA

Translation (167 aa):
MLRLRSGLRHLRATPNTRGSARLLCAEMPKKAGATTKGKSQSKEPERPLPPLGPVAVDPKGCVTIAIHAK
PGSKQNAVTDLTAEAVNVAIAAPPSEGEANAELCRYLSKVLELRKSDVVLDKTGSCYIAQAGLELLASSD
LPASASQSAGITGVSHHTQPALLLISL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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