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Report for CCDS53902.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53902.1 Public Homo sapiens 14 EXD2 24 110 108 CCDS HistoryNCBI Gene:55218Re-query CCDS DB by CCDS ID:53902.1Re-query CCDS DB by GeneID:55218See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53902.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000312994.9 ENSP00000313140.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000312994.9Link to Ensembl Protein Viewer:ENSP00000313140.5Re-query CCDS DB by Nucleotide ID:ENST00000312994Re-query CCDS DB by Protein ID:ENSP00000313140
Original member Current member EBI ENST00000409018.7 ENSP00000387331.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000409018.7Link to Ensembl Protein Viewer:ENSP00000387331.3Re-query CCDS DB by Nucleotide ID:ENST00000409018Re-query CCDS DB by Protein ID:ENSP00000387331
Original member Current member EBI ENST00000685843.1 ENSP00000510642.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000685843.1Link to Ensembl Protein Viewer:ENSP00000510642.1Re-query CCDS DB by Nucleotide ID:ENST00000685843Re-query CCDS DB by Protein ID:ENSP00000510642
Original member Current member NCBI NM_001193360.2 NP_001180289.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001193360.2Link to Protein Sequence:NP_001180289.1Re-query CCDS DB by Nucleotide ID:NM_001193360Re-query CCDS DB by Protein ID:NP_001180289Link to BLAST:NP_001180289.1
Original member Current member NCBI NM_001193361.2 NP_001180290.1 Accepted alive Link to Nucleotide Sequence:NM_001193361.2Link to Protein Sequence:NP_001180290.1Re-query CCDS DB by Nucleotide ID:NM_001193361Re-query CCDS DB by Protein ID:NP_001180290Link to BLAST:NP_001180290.1
Original member Current member NCBI NM_001193362.2 NP_001180291.1 Accepted alive Link to Nucleotide Sequence:NM_001193362.2Link to Protein Sequence:NP_001180291.1Re-query CCDS DB by Nucleotide ID:NM_001193362Re-query CCDS DB by Protein ID:NP_001180291Link to BLAST:NP_001180291.1
Original member Current member NCBI NM_001193363.2 NP_001180292.1 Accepted alive Link to Nucleotide Sequence:NM_001193363.2Link to Protein Sequence:NP_001180292.1Re-query CCDS DB by Nucleotide ID:NM_001193363Re-query CCDS DB by Protein ID:NP_001180292Link to BLAST:NP_001180292.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001180289.1 621 Q9NVH0-1 621 100% 0 0
NP_001180290.1 621 Q9NVH0-1 621 100% 0 0
NP_001180291.1 621 Q9NVH0-1 621 100% 0 0
NP_001180292.1 621 Q9NVH0-1 621 100% 0 0

Chromosomal Locations for CCDS 53902.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 69209471 69209803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 69228816 69229072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 69230472 69230598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 69234700 69235031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 69236046 69236152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 69236407 69236542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 69237575 69237931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 69240884 69241100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1866 nt):
ATGTCTAGACAGAACTTAGTGGCTTTGACAGTGACTACCCTTCTGGGTGTGGCTGTAGGGGGGTTTGTCC
TCTGGAAAGGCATCCAGCGCCGCCGAAGGAGTAAAACGAGTCCTGTGACCCAACAGCCACAGCAGAAAGT
GCTGGGCAGTAGAGAGCTGCCCCCTCCAGAAGATGATCAGCTGCACTCCAGTGCCCCCAGATCCTCGTGG
AAGGAACGGATCCTTAAAGCAAAGGTGGTGACGGTGTCTCAGGAGGCAGAGTGGGATCAAATCGAGCCCT
TGCTTAGAAGTGAATTAGAAGATTTTCCAGTACTTGGAATTGACTGTGAGTGGGTAAATTTGGAAGGCAA
AGCCAGCCCTCTGTCACTTCTACAAATGGCCTCCCCAAGTGGCCTGTGTGTCTTGGTTCGCCTGCCCAAG
CTAATCTGTGGAGGAAAAACACTACCAAGAACGTTATTGGATATTTTGGCAGATGGCACCATTTTGAAAG
TTGGAGTGGGATGCTCAGAAGATGCCAGCAAGCTTCTGCAGGATTATGGCCTCGTTGTTAGGGGGTGCCT
GGACCTCCGATACCTAGCCATGCGGCAGAGAAACAATTTGCTCTGTAATGGGCTTAGCCTGAAGTCCCTC
GCTGAGACTGTTTTGAACTTTCCCCTTGACAAGTCCCTTCTACTTCGTTGCAGCAACTGGGATGCTGAGA
CTCTCACAGAGGACCAGGTAATTTATGCTGCCAGGGATGCCCAGATTTCAGTGGCTCTCTTTCTTCATCT
TCTTGGATACCCTTTCTCTAGGAATTCACCTGGAGAAAAAAACGATGACCACAGTAGCTGGAGAAAAGTC
TTGGAAAAATGCCAGGGTGTGGTCGACATCCCATTTCGAAGCAAAGGAATGAGCAGATTGGGAGAAGAGG
TTAATGGGGAAGCAACAGAATCTCAGCAGAAGCCAAGAAATAAGAAGTCTAAGATGGATGGGATGGTGCC
AGGCAACCACCAAGGGAGAGACCCCAGAAAACATAAAAGAAAGCCTCTGGGGGTGGGCTATTCTGCCAGA
AAATCACCTCTTTATGATAACTGCTTTCTCCATGCTCCTGATGGACAGCCCCTCTGCACTTGTGATAGAA
GAAAAGCTCAGTGGTACCTGGACAAAGGCATTGGTGAGCTGGTGAGTGAAGAGCCCTTTGTGGTGAAGCT
ACGGTTTGAACCTGCAGGAAGGCCCGAATCTCCTGGAGACTATTACTTGATGGTTAAAGAGAACCTGTGT
GTAGTGTGTGGCAAGAGAGACTCCTACATTCGGAAGAACGTGATTCCACATGAGTACCGGAAGCACTTCC
CCATCGAGATGAAGGACCACAACTCCCACGATGTGCTGCTGCTCTGCACCTCCTGCCATGCCATTTCCAA
CTACTATGACAACCATCTGAAGCAGCAGCTGGCCAAGGAGTTCCAGGCCCCCATCGGCTCTGAGGAGGGC
TTGCGCCTGCTGGAAGATCCTGAGCGCCGGCAGGTGCGTTCTGGGGCCAGGGCCCTGCTCAACGCGGAGA
GCCTGCCTACTCAGCGAAAGGAGGAGCTGCTGCAAGCACTCAGAGAGTTTTATAACACAGACGTGGTCAC
AGAGGAGATGCTTCAAGAGGCTGCCAGCCTGGAGACCAGAATCTCCAATGAAAACTATGTTCCTCACGGG
CTGAAGGTGGTGCAGTGTCACAGCCAGGGTGGCCTGCGCTCCCTCATGCAGCTGGAGAGCCGCTGGCGTC
AGCACTTCCTGGACTCCATGCAGCCCAAGCACCTGCCCCAGCAGTGGTCAGTGGACCACAACCATCAGAA
GCTGCTCCGGAAATTCGGGGAAGATCTTCCCATCCAGCTGTCTTGA

Translation (621 aa):
MSRQNLVALTVTTLLGVAVGGFVLWKGIQRRRRSKTSPVTQQPQQKVLGSRELPPPEDDQLHSSAPRSSW
KERILKAKVVTVSQEAEWDQIEPLLRSELEDFPVLGIDCEWVNLEGKASPLSLLQMASPSGLCVLVRLPK
LICGGKTLPRTLLDILADGTILKVGVGCSEDASKLLQDYGLVVRGCLDLRYLAMRQRNNLLCNGLSLKSL
AETVLNFPLDKSLLLRCSNWDAETLTEDQVIYAARDAQISVALFLHLLGYPFSRNSPGEKNDDHSSWRKV
LEKCQGVVDIPFRSKGMSRLGEEVNGEATESQQKPRNKKSKMDGMVPGNHQGRDPRKHKRKPLGVGYSAR
KSPLYDNCFLHAPDGQPLCTCDRRKAQWYLDKGIGELVSEEPFVVKLRFEPAGRPESPGDYYLMVKENLC
VVCGKRDSYIRKNVIPHEYRKHFPIEMKDHNSHDVLLLCTSCHAISNYYDNHLKQQLAKEFQAPIGSEEG
LRLLEDPERRQVRSGARALLNAESLPTQRKEELLQALREFYNTDVVTEEMLQEAASLETRISNENYVPHG
LKVVQCHSQGGLRSLMQLESRWRQHFLDSMQPKHLPQQWSVDHNHQKLLRKFGEDLPIQLS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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