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Report for CCDS53839.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53839.1 Public Homo sapiens 12 HPD 24 110 108 CCDS HistoryNCBI Gene:3242Re-query CCDS DB by CCDS ID:53839.1Re-query CCDS DB by GeneID:3242See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53839.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000543163.5 ENSP00000441677.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000543163.5Link to Ensembl Protein Viewer:ENSP00000441677.1Re-query CCDS DB by Nucleotide ID:ENST00000543163Re-query CCDS DB by Protein ID:ENSP00000441677
Original member Current member NCBI NM_001171993.2 NP_001165464.1 Accepted alive Link to Nucleotide Sequence:NM_001171993.2Link to Protein Sequence:NP_001165464.1Re-query CCDS DB by Nucleotide ID:NM_001171993Re-query CCDS DB by Protein ID:NP_001165464Link to BLAST:NP_001165464.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001165464.1 354 P32754-2 354 100% 0 0

Chromosomal Locations for CCDS 53839.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 121839728 121839838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 121839932 121840048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 121843710 121843832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 121846862 121846933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 121847052 121847214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 121848999 121849076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 121849687 121849790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 121854703 121854792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 121856324 121856406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 121856583 121856625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 121857328 121857408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1065 nt):
ATGGGCTTTGAACCTCTAGCCTACAGGGGCCTGGAGACCGGTTCCCGGGAGGTGGTCAGCCATGTAATCA
AACAAGGGAAGATTGTGTTTGTCCTCTCCTCAGCGCTCAACCCCTGGAACAAAGAGATGGGCGATCACCT
GGTGAAACACGGTGACGGAGTGAAGGACATTGCGTTCGAGGTGGAAGATTGTGACTACATCGTGCAGAAA
GCACGGGAACGGGGCGCCAAAATCATGCGGGAGCCCTGGGTAGAGCAAGACAAGTTTGGGAAGGTGAAGT
TTGCTGTGCTGCAGACGTATGGGGACACCACACACACCCTGGTGGAGAAGATGAACTACATCGGCCAATT
CTTGCCTGGATATGAGGCCCCAGCGTTCATGGACCCCCTACTTCCTAAACTGCCCAAATGCAGTCTGGAG
ATGATCGACCACATTGTGGGAAACCAGCCTGATCAGGAGATGGTGTCCGCCTCCGAATGGTACCTGAAAA
ACCTGCAGTTCCACCGCTTCTGGTCCGTGGATGACACGCAGGTGCACACGGAATATAGCTCTCTGCGATC
CATTGTGGTGGCCAACTATGAAGAGTCCATCAAGATGCCCATCAATGAGCCAGCGCCTGGCAAGAAGAAG
TCCCAGATCCAGGAATATGTGGACTATAACGGGGGCGCTGGGGTCCAGCACATCGCTCTCAAGACCGAAG
ACATCATCACAGCGATTCGCCACTTGAGAGAGAGAGGCCTGGAGTTCTTATCTGTTCCCTCCACGTACTA
CAAACAACTGCGGGAGAAGCTGAAGACGGCCAAGATCAAGGTGAAGGAGAACATTGATGCCCTGGAGGAG
CTGAAAATCCTGGTGGACTACGACGAGAAAGGCTACCTCCTGCAGATCTTCACCAAACCGGTGCAGGACC
GGCCCACGCTCTTCCTGGAAGTCATCCAGCGCCACAACCACCAGGGTTTTGGAGCCGGCAACTTCAACTC
ACTGTTCAAGGCTTTCGAGGAGGAGCAGAACCTGCGGGGTAACCTCACCAACATGGAGACCAATGGGGTG
GTGCCCGGCATGTAA

Translation (354 aa):
MGFEPLAYRGLETGSREVVSHVIKQGKIVFVLSSALNPWNKEMGDHLVKHGDGVKDIAFEVEDCDYIVQK
ARERGAKIMREPWVEQDKFGKVKFAVLQTYGDTTHTLVEKMNYIGQFLPGYEAPAFMDPLLPKLPKCSLE
MIDHIVGNQPDQEMVSASEWYLKNLQFHRFWSVDDTQVHTEYSSLRSIVVANYEESIKMPINEPAPGKKK
SQIQEYVDYNGGAGVQHIALKTEDIITAIRHLRERGLEFLSVPSTYYKQLREKLKTAKIKVKENIDALEE
LKILVDYDEKGYLLQIFTKPVQDRPTLFLEVIQRHNHQGFGAGNFNSLFKAFEEEQNLRGNLTNMETNGV
VPGM


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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