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Report for CCDS53780.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53780.1 Public Homo sapiens 12 YAF2 24 110 108 CCDS HistoryNCBI Gene:10138Re-query CCDS DB by CCDS ID:53780.1Re-query CCDS DB by GeneID:10138See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 53780.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000555248.2 ENSP00000451626.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000555248.2Link to Ensembl Protein Viewer:ENSP00000451626.2Re-query CCDS DB by Nucleotide ID:ENST00000555248Re-query CCDS DB by Protein ID:ENSP00000451626
Original member Current member NCBI NM_001190980.3 NP_001177909.1 Accepted alive Link to Nucleotide Sequence:NM_001190980.3Link to Protein Sequence:NP_001177909.1Re-query CCDS DB by Nucleotide ID:NM_001190980Re-query CCDS DB by Protein ID:NP_001177909Link to BLAST:NP_001177909.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001177909.1 117 Q8IY57-4 117 100% 0 0

Chromosomal Locations for CCDS 53780.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 42235796 42235997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 42237599 42237724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 42238155 42238180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (354 nt):
ATGGGAGACAAGAAGAGCCCCACCAGGCCGAAGCGGCAGCCGAAGCCGTCCTCGGATGAGGGTTACTGGG
ACTGTAGCGTCTGCACCTTCCGGAACAGCGCCGAGGCCTTCAAGTGCATGATGTGCGATGTGCGGAAGGG
CACCTCCACCCGGGACAGCAAGGAAGGGGGGAAGCTGGTGTCCTACTCCACAGCCAGTCTTGGGGTTAGA
GGAACCCTGAGAAATAGAGTAGGTGGTGGCAGCTCAGAAGAGAAGAAACAGGCTGAATACCTGGCACCTG
GAAGAAGAAGGAATATAGTACACAGGGGAGTTGGCCCAGGACAGAGAAGTGGGCCTAGTTTAAAAGAGGC
TTGA

Translation (117 aa):
MGDKKSPTRPKRQPKPSSDEGYWDCSVCTFRNSAEAFKCMMCDVRKGTSTRDSKEGGKLVSYSTASLGVR
GTLRNRVGGGSSEEKKQAEYLAPGRRRNIVHRGVGPGQRSGPSLKEA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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