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Report for CCDS53563.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53563.1 Public Homo sapiens 10 ZFYVE27 24 110 108 CCDS HistoryNCBI Gene:118813Re-query CCDS DB by CCDS ID:53563.1Re-query CCDS DB by GeneID:118813See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 53563.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000357540.8 ENSP00000350148.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000357540.8Link to Ensembl Protein Viewer:ENSP00000350148.4Re-query CCDS DB by Nucleotide ID:ENST00000357540Re-query CCDS DB by Protein ID:ENSP00000350148
Original member Current member NCBI NM_001174120.2 NP_001167591.1 Accepted alive Link to Nucleotide Sequence:NM_001174120.2Link to Protein Sequence:NP_001167591.1Re-query CCDS DB by Nucleotide ID:NM_001174120Re-query CCDS DB by Protein ID:NP_001167591Link to BLAST:NP_001167591.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001167591.1 318 Q5T4F4-5 318 100% 0 0

Chromosomal Locations for CCDS 53563.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 97738478 97738674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 97748269 97748364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 97749474 97749586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 97750331 97750470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 97751391 97751462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 97753038 97753182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 97757265 97757311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 97757642 97757723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 97759236 97759300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (957 nt):
ATGCAGACATCAGAACGTGAGGGGAGTGGGCCGGAGCTGAGCCCCAGCGTGATGCCCGAGGCTCCCCTGG
AGTCTCCACCTTTTCCTACCAAGTCCCCAGCGTTTGACCTTTTCAACTTGGTTCTCTCCTACAAGAGGCT
GGAGATCTACCTGGAACCCTTGAAGGATGCAGGTGATGGTGTTCGATACTTGCTCAGCTTGATCCAGCTG
GAGGCCTTCCTGAGCCGCCTGTGCTGCACATGTGAAGCCGCCTACCGCGTGCTGCACTGGGAGAACCCCG
TCGTGTCCTCACAGTTCTATGGGGCTCTTCTGGGCACAGTCTGCATGCTGTATTTGCTGCCACTCTGCTG
GGTTCTCACCCTTTTAAACAGCACGCTCTTTCTGGGGAATGTGGAGTTCTTCCGAGTTGTGTCTGAGTAC
AGGGCATCTCTGCAGCAGAGGATGAACCCAAAGCAGGAAGAGCATGCCTTTGAGAGTCCTCCACCACCAG
ATGTTGGGGGGAAGGATGGTCTGATGGACAGCACGCCTGCCCTCACACCCACGGAGGACCTCACACCGGG
CAGCGTGGAGGAGGCTGAGGAGGCTGAGCCAGATGAAGAGTTTAAAGATGCGATTGAGGAGGATGATGAG
GGCGCCCCGTGCCCAGCAGAGGATGAGCTGGCCCTGCAGGACAACGGGTTCCTGAGCAAGAATGAGGTGC
TGCGCAGCAAGGTGTCTCGGCTCACGGAGCGGCTCCGCAAGCGCTACCCCACCAACAACTTCGGGAACTG
CACGGGCTGCTCGGCCACCTTCTCAGTGCTGAAGAAGAGGCGGAGCTGCAGTAATTGTGGAAACAGCTTC
TGCTCTCGATGCTGCTCCTTCAAGGTGCCCAAGTCCTCCATGGGGGCCACAGCCCCTGAAGCCCAGAGGG
AGACTGTGTTTGTGTGTGCCTCGTGTAACCAGACCTTGAGCAAGTGA

Translation (318 aa):
MQTSEREGSGPELSPSVMPEAPLESPPFPTKSPAFDLFNLVLSYKRLEIYLEPLKDAGDGVRYLLSLIQL
EAFLSRLCCTCEAAYRVLHWENPVVSSQFYGALLGTVCMLYLLPLCWVLTLLNSTLFLGNVEFFRVVSEY
RASLQQRMNPKQEEHAFESPPPPDVGGKDGLMDSTPALTPTEDLTPGSVEEAEEAEPDEEFKDAIEEDDE
GAPCPAEDELALQDNGFLSKNEVLRSKVSRLTERLRKRYPTNNFGNCTGCSATFSVLKKRRSCSNCGNSF
CSRCCSFKVPKSSMGATAPEAQRETVFVCASCNQTLSK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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