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Report for CCDS53354.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53354.1 Public Homo sapiens 1 REG4 24 110 108 CCDS HistoryNCBI Gene:83998Re-query CCDS DB by CCDS ID:53354.1Re-query CCDS DB by GeneID:83998See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53354.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000369401.4 ENSP00000358409.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000369401.4Link to Ensembl Protein Viewer:ENSP00000358409.4Re-query CCDS DB by Nucleotide ID:ENST00000369401Re-query CCDS DB by Protein ID:ENSP00000358409
Original member Current member NCBI NM_001159353.2 NP_001152825.1 Accepted alive Link to Nucleotide Sequence:NM_001159353.2Link to Protein Sequence:NP_001152825.1Re-query CCDS DB by Nucleotide ID:NM_001159353Re-query CCDS DB by Protein ID:NP_001152825Link to BLAST:NP_001152825.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001152825.1 134 Q9BYZ8-2 134 100% 0 0

Chromosomal Locations for CCDS 53354.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 119802828 119803165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 119808703 119808769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (405 nt):
ATGGCTTCCAGAAGCATGCGGCTGCTCCTATTGCTGAGCTGCCTGGCCAAAACAGGAGTCCTGGGTGATA
TCATCATGAGACCCAGCTGTGCTCCTGGATGGTTTTACCACAAGTCCAATTGCTATGGTTACTTCAGGAA
GCTGAGGAACTGGTCTGATGCCGAGGTAAGAAACTTGCTGCCTGCTTGGCCTGGCCTTTCTAGAGCAAAG
GACCAGCCAGAGCCCCAGATCTCATTTGATTCAGGATCAAGTGTCCTTCCTGGGCACTATGAAGAGAAGC
CCCTTTGGCTGGTGAAATGGAGAGAAGAGGGTTGTGTGTTCAACTCATTCAATTCTGTAAGCATTGCTGA
AGCAGGTGCTGTATGCCAGACCCTAGATGGGCTACAAGCACATACGGATACATAG

Translation (134 aa):
MASRSMRLLLLLSCLAKTGVLGDIIMRPSCAPGWFYHKSNCYGYFRKLRNWSDAEVRNLLPAWPGLSRAK
DQPEPQISFDSGSSVLPGHYEEKPLWLVKWREEGCVFNSFNSVSIAEAGAVCQTLDGLQAHTDT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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