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Report for CCDS53292.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53292.1 Public Homo sapiens 1 PTP4A2 24 110 108 CCDS HistoryNCBI Gene:8073Re-query CCDS DB by CCDS ID:53292.1Re-query CCDS DB by GeneID:8073See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53292.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000457805.6 ENSP00000409260.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000457805.6Link to Ensembl Protein Viewer:ENSP00000409260.2Re-query CCDS DB by Nucleotide ID:ENST00000457805Re-query CCDS DB by Protein ID:ENSP00000409260
Original member Current member NCBI NM_001195101.2 NP_001182030.1 Accepted alive Link to Nucleotide Sequence:NM_001195101.2Link to Protein Sequence:NP_001182030.1Re-query CCDS DB by Nucleotide ID:NM_001195101Re-query CCDS DB by Protein ID:NP_001182030Link to BLAST:NP_001182030.1
Original member Current member NCBI NM_001369858.1 NP_001356787.1 Accepted alive Link to Nucleotide Sequence:NM_001369858.1Link to Protein Sequence:NP_001356787.1Re-query CCDS DB by Nucleotide ID:NM_001369858Re-query CCDS DB by Protein ID:NP_001356787Link to BLAST:NP_001356787.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001182030.1 136 Q12974-3 136 100% 0 0
NP_001356787.1 136 Q12974-3 136 100% 0 0

Chromosomal Locations for CCDS 53292.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 31908852 31908960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 31910038 31910112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 31911696 31911826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 31918970 31919065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (411 nt):
ATGAACCGTCCAGCCCCTGTGGAGATCTCCTATGAGAACATGCGTTTTCTGATAACTCACAACCCTACCA
AT
GCTACTCTCAACAAGTTCACAGAGGATTGGCCATTTGATGATGGAGCTCCACCCCCTAATCAGATAGT
A
GATGATTGGTTAAACCTGTTAAAAACCAAATTTCGTGAAGAGCCAGGTTGCTGTGTTGCAGTGCATTGT
GTT
GCAGGATTGGGAAGGGCACCTGTGCTGGTTGCACTTGCTTTGATTGAATGTGGAATGAAGTACGAAG
AT
GCAGTTCAGTTTATAAGACAAAAAAGAAGGGGAGCGTTCAATTCCAAACAGCTGCTTTATTTGGAGAA
A
TACCGACCTAAGATGCGATTACGCTTCAGAGATACCAATGGGCATTGCTGTGTTCAGTAG


Translation (136 aa):
MNRPAPVEISYENMRFLITHNPTNATLNKFTEDWPFDDGAPPPNQIVDDWLNLLKTKFREEPGCCVAVHC
V
AGLG
RAPVLVALALIECGMKYEDAVQFIRQKRRGAFNSKQLLYLEKYRPKMRLRFRDTNGHCCVQ



Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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