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Report for CCDS53248.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53248.1 Under review, update Mus musculus X Ofd1 23 108 98 CCDS HistoryNCBI Gene:237222Re-query CCDS DB by CCDS ID:53248.1Re-query CCDS DB by GeneID:237222See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 53248.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000049501.8 ENSMUSP00000041744.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049501.8Link to Ensembl Protein Viewer:ENSMUSP00000041744.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000049501Re-query CCDS DB by Protein ID:ENSMUSP00000041744
Original member NCBI NM_177429.3 NP_803178.2 Updated not alive Link to Nucleotide Sequence:NM_177429.3Link to Protein Sequence:NP_803178.2Re-query CCDS DB by Nucleotide ID:NM_177429Re-query CCDS DB by Protein ID:NP_803178
Current member NCBI NM_177429.4 NP_803178.3 Pending alive Link to Nucleotide Sequence:NM_177429.4Link to Protein Sequence:NP_803178.3Re-query CCDS DB by Nucleotide ID:NM_177429Re-query CCDS DB by Protein ID:NP_803178Link to BLAST:NP_803178.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_803178.3 1017 Q80Z25 1017 100% 0 0

Chromosomal Locations for CCDS 53248.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 166391016 166391058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 166391891 166391958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 166392418 166392570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 166393177 166393331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 166400920 166401033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 166403542 166403639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 166405426 166405582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 166405997 166406608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 166408589 166408700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 166409488 166409618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 166410606 166410795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 166411816 166411907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 166413301 166413374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 166414976 166415095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 166424976 166425082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 166426820 166426993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 166427168 166427304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 166428528 166428635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 166431689 166431719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 166431802 166431870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 166435335 166435535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 166440029 166440127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 166440280 166440294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3060 nt):
ATGAGGATGGCTCAGTCCAACATGCCCCACAAGTCTGATGTGTTGAGTCAAGATGAACTGCGCAAAAAGC
TATACCAGACGTTTAAGGATCGGGGTGTACTGGACACACTTCAGACCCAACTCCGAAACCAGCTAATTCA
TGAATTGATGCATCCTGTATTGAGTGGAGAAGTGAAGCCGCCATCCATTTCAGTGGAAGGGAGTGCCCTC
CTAATAGGGGCTTCTAACTCGCTGGTGGCAGACCACTTACAAAGATGTGGCTATGAATATTCACTCTCTG
TTTTCTTTCCAGAAAGTGGTTTGGCAAAAGAAAAGATATTTACTATGCAGGATCTACTACAACTCATTCG
GATTAACCCCTCATCCAGTCTCTATAAATCATTGATTTCAGGATTTGATAAAGAAAATAAAAAAGGTTTT
CTTATGAGTTTCTTAAAGGAGTTGGCAGAATATTATCAAGCTAAAGAGAGCTGTGATGCGGAAACTCAGA
CAAGCACCACATTTCCCAGCCAAGTGTCCCTAGCCGAGAAGTTTCAGCTTATTGACGCTCAATTTGCAGA
TGGTTTTCCTCACCGTTCCAAGCTAGAATCTTTAGAGACAAAGTTAAACGAGTATAAGAAAGAAGTACAA
CACCAGCTTCAGGTAGAAATGTGTCATAAGCTGAAGTATTTTAGAGAAGCTGAAATAACAAAAGTTAAGA
TGGAAGAGAGAAGAAAGTATGAAAAGGAATTGGCTGAGTTCCAGAATGAATTTGAAAGAACTTGTCAAGC
AAAAAATGAAGCCCTCATTTCTCAGGAGAAGAATTCTCTGGAAAGAATTAAAAAACACCGAGAGATGGAA
TCAAAAGAAATTTATGCTCAAAGACAGCTTCTACTAAATGATATAGCTTTGCTTAGAGGTAGAGAAGCAG
AGCTGAAGGAGCGAATCGAAACTTTTGAATTGACCCAGAAGCTCCAAGAAGAAAAAATTAAAAGTGAGGC
TGAGGCACTTGAGAGACGGGAACAGAATCTGAAGAATATTGAAGACACCTATGATCAGAAACTCAAAACT
GAACTGCTAAAGTACCAACTGGAGCTAAAGGATGACTACATCACTAGGACAAATAAACTCCTGGAAGAGG
AAAGGAAGAATAAAGAAAAAACTATTCATTTGCAAGAGGAGCTCACAGTTATTAATTCAAAAAAGGAAGA
ACTCAGTAAATCTGTTAAGCATATGAAAGAAGTTGAGCTGGAACTGGAGTCTGTGAAAGCTCAGTTTTTA
GCAATATCAAAACAAAACCACTTGCTGAATGAAAAGGTGAGAGAGATGAGTGATTACTCACAACTGAAAG
AAGAGAAAGTGGAGCTTCAGGCACAAAATAAACTACTTAAACTGCAACTGGAAGAGACTAGGAATGAAAA
CTTACGACTCCTAGACCGCATAACTCAGCCACCTCCTGAGCTTGTGATTTTTCAGAAGGAATTACAGAAA
ACAGAAAAGGCTATGGAACTGGAGCACAAGGACTTTGAAACTCATAGGCAGGCTCTTGAGAAACAGCTGC
AGAGTGAAATTGAAAATTCTGCACAGCTAAGGACCCAGATAGCAGAATATGATGCTTCTGTCAAAAGGTT
AACTGTTCAGGTGGCTGAGTTAAAGTCACAACTAAAACAAACTCAGATAGCCCTAGAGAATGAAGTGTAC
CGAAATCCAAAACACTCTCTGATTCATTCCCTGAGTGGCCTCCTATTGAGCGGCAAGATGGCACCCCACA
GTGAAGATAAAAGTGGGGATTTCTTGAATGTACCCCTTGAACAGAACAAGGTTATAGCAGGTGCAGTTAT
GTCAAGGGTCCCACCTTATGTAAATACAGCAACAGAAGCTAGTTCCCCAGAGTCTGACTTTGAGTTTATA
GCCAGTAGTACTAAAGCCAAAGTAAGAGAGCTAGAGCAAGAGGCTGAACGCTTGGAAAAGGCATTCAGAA
CTTACTATCAAAGAGCTACTCAGAATCCTTCTACGAGCCCTCAGCCGGCAAAGAGTCCTCCATCTGTAAA
CTCGGTGGCAGCTCTCAGAAGCATAGCTTCCAGTTCCATGGACAGACCTGTTTCTGCAGAGGACAGAGTT
GTCTCGGAACAGCCTCTTGGGGACATGCTGAAGGAAGAAATGAGTGATATGTCCAAAGCATTCATGGGCA
GTGTGGTTTCACGGCCACGCAGGACCTCTTCCTCCACACGCCTCTCCTCTACACCCCATCCAAAATCGAG
AAGAAGTCTTGATAATGAAATGTATCTGGAAGGTCTCGGGAGATTACACATGACTTCCTCCAGCCCTCTT
CTTGACAGAGTTTCTGCATCACCTGCTGCTTCCCCTAGTCCTTGTCCTGAGAGAACAGCCCAGGCGTCAC
CTGTTCCATCTAGGCACAGCTTCTCTGGTCTTCCAGAGCAAAATGCCTGTTTATATCAGAGACAAACTGA
AACGCAAGATAAAAGTGAGCTTTCAAATGTGGACAAGCAATCTTTGAAAGATGAGAAATTTGAACCACCT
TTCAGATGGAACAAGACAGAACAGTTTGAAGCAGAAGGACTCCACCCTGCTGGTGACATGCCTGGAATAG
ATTTTGCTGTGGCTACTCAGTCTTCAAGACTCATTTCATACGACTACCCAAGTGCTGTTCAGAGCCAAAC
TGGAGAACAAGACGAACAGGAGCTATGGGAGCTTCACATGAAAGAACGCAGGCAGAGAGAAGAACAAAGG
CATAATGAACGGCAAGAAGCTTTAGAGAGGGAAAGAAGAGAGCTGGGAAAACTAGAGCAGGAGCGGAGGA
TGATTGAAGAGTCACTGAAGATGGAGATGGAAGAAGAATTAGAAAAGAGTGTTCAAGACCAGAAAGACAA
ATCAGCTCATTGTGAAAATACTTTAGAAAAATACATGAAAATTATCCAGCAGAGACAGGAAGAATCAAAT
GCAGATAAGAGCTCCAAAAAATCGGGCAAAGAATGCTCACTAGTGGACATGATGATGCCTAGTGACAAGG
ATGAAAGTTCTCCAGGATTTTCTCATGAAGAACCAGATGACATGTGGTAA

Translation (1019 aa):
MRMAQSNMPHKSDVLSQDELRKKLYQTFKDRGVLDTLQTQLRNQLIHELMHPVLSGEVKPPSISVEGSAL
LIGASNSLVADHLQRCGYEYSLSVFFPESGLAKEKIFTMQDLLQLIRINPSSSLYKSLISGFDKENKKGF
LMSFLKELAEYYQAKESCDAETQTSTTFPSQVSLAEKFQLIDAQFADGFPHRSKLESLETKLNEYKKEVQ
HQLQVEMCHKLKYFREAEITKVKMEERRKYEKELAEFQNEFERTCQAKNEALISQEKNSLERIKKHREME
SKEIYAQRQLLLNDIALLRGREAELKERIETFELTQKLQEEKIKSEAEALERREQNLKNIEDTYDQKLKT
ELLKYQLELKDDYITRTNKLLEEERKNKEKTIHLQEELTVINSKKEELSKSVKHMKEVELELESVKAQFL
AISKQNHLLNEKVREMSDYSQLKEEKVELQAQNKLLKLQLEETRNENLRLLDRITQPPPELVIFQKELQK
TEKAMELEHKDFETHRQALEKQLQSEIENSAQLRTQIAEYDASVKRLTVQVAELKSQLKQTQIALENEVY
RNPKHSLIHSLSGLLLSGKMAPHSEDKSGDFLNVPLEQNKVIAGAVMSRVPPYVNTATEASSPESDFEFI
ASSTKAKVRELEQEAERLEKAFRTYYQRATQNPSTSPQPAKSPPSVNSVAALRSIASSSMDRPVSAEDRV
VSEQPLGDMLKEEMSDMSKAFMGSVVSRPRRTSSSTRLSSTPHPKSRRSLDNEMYLEGLGRLHMTSSSPL
LDRVSASPAASPSPCPERTAQASPVPSRHSFSGLPEQNACLYQRQTETQDKSELSNVDKQSLKDEKFEPP
FRWNKTEQFEAEGLHPAGDMPGIDFAVATQSSRLISYDYPSAVQSQTGEQDEQELWELHMKERRQREEQR
HNERQEALERERRELGKLEQERRMIEESLKMEMEEELEKSVQDQKDKSAHCENTLEKYMKIIQQRQEESN
ADKSSKKSGKECSLVDMMMPSDKDESSPGFSHEEPDDMW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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