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Report for CCDS53218.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53218.1 Public Mus musculus X Vcf2 23 108 98 CCDS HistoryNCBI Gene:382245Re-query CCDS DB by CCDS ID:53218.1Re-query CCDS DB by GeneID:382245See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53218.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000059256.7 ENSMUSP00000053632.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000059256.7Link to Ensembl Protein Viewer:ENSMUSP00000053632.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000059256Re-query CCDS DB by Protein ID:ENSMUSP00000053632
Original member Current member EBI ENSMUST00000173996.7 ENSMUSP00000134594.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000173996.7Link to Ensembl Protein Viewer:ENSMUSP00000134594.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000173996Re-query CCDS DB by Protein ID:ENSMUSP00000134594
Original member Current member NCBI NM_001164683.2 NP_001158155.1 Accepted alive Link to Nucleotide Sequence:NM_001164683.2Link to Protein Sequence:NP_001158155.1Re-query CCDS DB by Nucleotide ID:NM_001164683Re-query CCDS DB by Protein ID:NP_001158155Link to BLAST:NP_001158155.1
Original member Current member NCBI NM_001164684.2 NP_001158156.1 Accepted alive Link to Nucleotide Sequence:NM_001164684.2Link to Protein Sequence:NP_001158156.1Re-query CCDS DB by Nucleotide ID:NM_001164684Re-query CCDS DB by Protein ID:NP_001158156Link to BLAST:NP_001158156.1
Original member Current member NCBI NM_001359039.1 NP_001345968.1 Accepted alive Link to Nucleotide Sequence:NM_001359039.1Link to Protein Sequence:NP_001345968.1Re-query CCDS DB by Nucleotide ID:NM_001359039Re-query CCDS DB by Protein ID:NP_001345968Link to BLAST:NP_001345968.1

Chromosomal Locations for CCDS 53218.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 150398179 150398793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (615 nt):
ATGGATCCACTGCAGAAATGGGATCCAATGTCAATTTCCGTGCCCTCATGTATAGCCACTGTGAGTAGCT
CTCAAGAGGCCTCAGCAGCCCCTCAGCCTTCCTCTTCAGAAAAGCTAAGCATGGGTCTCAGCATCTTGAG
CGTCAGCCCCAGCCCCCGCTCCAGTGTCCCTGCTTCTCTGTCAGAGGGGCTGTTCCAGCAGCAGGCCCGG
GAGAAGAAGGCCCTGTGGCAGCAGTACTGGGAGAAGCAGGGCTTTCCTCAGAGGAAGAAAGTCTTCCTGA
GGCATTCGAGACGCTGGCACCGGGATCACATGGCACCTTACCTGCTTGAAAGGGATCTCAGAGGCTTTCC
CTCAGGTGACAAAGCTCAGAATCAGCTTCGATGTCAGGGCCACGTGCAGAATATTGCTGGGATGAGTGGG
CAGAAGAACGCGGCCCCTAACCCTCCCTCCTGGGAAATGCTGGTGCAGGGTCTCAATGGCCTTACCCTCA
GCTTGGGAGCCAACAGACCCGTCCCCCTGCCAGAGGAACCTTGGCAGCAGCAGGAGCCAGAGGACATGCG
CCAGCTGGAGAGGCAGCAGGAAAACCTGAAGATGTTCCAGAGGATGCTCAAGTAG

Translation (204 aa):
MDPLQKWDPMSISVPSCIATVSSSQEASAAPQPSSSEKLSMGLSILSVSPSPRSSVPASLSEGLFQQQAR
EKKALWQQYWEKQGFPQRKKVFLRHSRRWHRDHMAPYLLERDLRGFPSGDKAQNQLRCQGHVQNIAGMSG
QKNAAPNPPSWEMLVQGLNGLTLSLGANRPVPLPEEPWQQQEPEDMRQLERQQENLKMFQRMLK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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