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Report for CCDS53099.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53099.1 Public Mus musculus X Ssr4 23 108 98 CCDS HistoryNCBI Gene:20832Re-query CCDS DB by CCDS ID:53099.1Re-query CCDS DB by GeneID:20832See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 53099.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000166518.7 ENSMUSP00000131386.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000166518.7Link to Ensembl Protein Viewer:ENSMUSP00000131386.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000166518Re-query CCDS DB by Protein ID:ENSMUSP00000131386
Original member NCBI NM_001166480.2 NP_001159952.1 Updated not alive Link to Nucleotide Sequence:NM_001166480.2Link to Protein Sequence:NP_001159952.1Re-query CCDS DB by Nucleotide ID:NM_001166480Re-query CCDS DB by Protein ID:NP_001159952
Current member NCBI NM_001166480.3 NP_001159952.1 Accepted alive Link to Nucleotide Sequence:NM_001166480.3Link to Protein Sequence:NP_001159952.1Re-query CCDS DB by Nucleotide ID:NM_001166480Re-query CCDS DB by Protein ID:NP_001159952Link to BLAST:NP_001159952.1

Chromosomal Locations for CCDS 53099.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 73787240 73787306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73788835 73788953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73789800 73789874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73790031 73790120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73790359 73790424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73790654 73790758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (522 nt):
ATGGCGGCGATGGCATCTTTCGGCGCCCTGGCACTACTCCTGCTGTCTGGCCTATCTTGCTGCTCAGCAG
AGGCCTGCCTGGAACCACAGATCACCCCTTCTTACTATACAACTTCAGATGCCGTCATTTCTACAGAGAC
TGTATTCATCGTGGAGATTTCACTGACCTGCAAGAACAGGGTCCAGAACATGGCTCTTTATGCCGACGTT
AGTGGAAAACAATTTCCTGTAACCCGCGGCCAGGATGTGGGTCGATATCAGGTGTCCTGGAGCCTGGAGC
ACAAGAGCGCTCATGCGGGCACCTATGAGGTCAGATTCTTTGATGAAGAGTCCTATAGCCTCCTAAGGAA
GGCTCAGAGAAATAATGAGGACGTTTCTATCATTCCACCCCTGTTCACAGTCAGTGTGGACCATCGGGGT
ACCTGGAATGGGCCTTGGGTCTCCACAGAGGTGCTGGCTGCAGTAATTGGCATAGTGATCTACTACCTAG
CTTTCAGTGCAAAGAGCCACATCCAGGCCTGA

Translation (173 aa):
MAAMASFGALALLLLSGLSCCSAEACLEPQITPSYYTTSDAVISTETVFIVEISLTCKNRVQNMALYADV
SGKQFPVTRGQDVGRYQVSWSLEHKSAHAGTYEVRFFDEESYSLLRKAQRNNEDVSIIPPLFTVSVDHRG
TWNGPWVSTEVLAAVIGIVIYYLAFSAKSHIQA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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