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Report for CCDS52983.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52983.1 Public Mus musculus X Usp27x 23 108 98 CCDS HistoryNCBI Gene:54651Re-query CCDS DB by CCDS ID:52983.1Re-query CCDS DB by GeneID:54651See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52983.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000115744.1 ENSMUSP00000111409.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115744.1Link to Ensembl Protein Viewer:ENSMUSP00000111409.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000115744Re-query CCDS DB by Protein ID:ENSMUSP00000111409
Original member Current member EBI ENSMUST00000178293.7 ENSMUSP00000137509.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000178293.7Link to Ensembl Protein Viewer:ENSMUSP00000137509.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000178293Re-query CCDS DB by Protein ID:ENSMUSP00000137509
Original member Current member EBI ENSMUST00000191497.1 ENSMUSP00000139402.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000191497.1Link to Ensembl Protein Viewer:ENSMUSP00000139402.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000191497Re-query CCDS DB by Protein ID:ENSMUSP00000139402
Original member Current member NCBI NM_019461.4 NP_062334.2 Accepted alive Link to Nucleotide Sequence:NM_019461.4Link to Protein Sequence:NP_062334.2Re-query CCDS DB by Nucleotide ID:NM_019461Re-query CCDS DB by Protein ID:NP_062334Link to BLAST:NP_062334.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062334.2 438 Q8CEG8 438 100% 0 0

Chromosomal Locations for CCDS 52983.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 7373545 7374861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1317 nt):
ATGTGTAAAGACTATGTGTATGACATAGACATTGAGCAAATTGCCAAAGAAGAGCAAGGAGAAGCCTTGA
AATTACAAGCGTCCACCTCGACAGAGGTTTCTCAGCAACAGTGTTCAGTGCCGGGACTTGGGGAGAAATA
TCCCACCTGGGAAACGACCAAACCTGAACTAGAACTTCTGGGGCACAACCCACGGAGAAGAAGGATCGCC
TCCAGCTTTACCATCGGCTTACGAGGACTAATTAATCTTGGCAACACGTGTTTTATGAACTGCATTGTCC
AGGCCTTGACCCACACTCCAATACTGAGAGATTTCTTTCTCTCTGACAGGCACCGGTGTGAAATGCCCAG
CCCTGAGTTGTGTCTGGTCTGTGAGATGTCGTCGCTCTTTCGGGAGCTGTATTCTGGAAACCCATCTCCT
CATGTGCCCTATAAGTTACTGCACCTGGTGTGGATACACGCTCGTCATCTAGCAGGGTACAGGCAGCAGG
ATGCCCACGAGTTCCTCATCGCTGCGCTAGATGTCCTGCATAGGCACTGCAAAGGTGACGATGTTGGCAA
GGTGGCCAGCAACCCCAACCACTGTAACTGCATCATAGACCAAATCTTCACAGGTGGCCTGCAGTCCGAT
GTCACCTGTCAAGCCTGCCATGGTGTCTCCACCACTATAGACCCATGCTGGGACATTAGTCTGGACTTGC
CTGGCTCTTGCACATCCTTCTGGCCCATGAGCCCTGGGAGGGAGAGCAGTTTGAATGGCGAAAGCCACAT
CCCAGGCATCACCACTCTCACGGACTGCTTGCGAAGGTTTACAAGGCCAGAGCACTTAGGAAGTAGTGCC
AAAATCAAGTGTGGTAGTTGCCAAAGCTACCAAGAATCTACCAAACAGCTCACTATGAAGAAGTTACCAG
TAGTTGCCTGCTTTCATTTCAAACGGTTTGAACACTCAGCGAAACAGAGGCGCAAGATCACTACGTACAT
TTCCTTTCCTCTGGAGCTGGATATGACACCATTTATGGCGTCAAGTAAAGAGACCCGGGTGAATGGACAG
TTGCAGCTCCCAACCAATAGTGCGAACAACGAGAATAAGTATTCCTTGTTTGCTGTGGTTAATCACCAAG
GAACCTTGGAGAGTGGCCACTACACCAGCTTCATTCGGCACCACAGGGACCAGTGGTTCAAGTGTGATGA
TGCCGTAATCACCAAGGCCAGTATTAAGGATGTGCTGGACAGTGAAGGGTATTTACTGTTCTATCACAAA
CAGGTCCTGGAACCTGAGCCAGAAAAGGTGAAAGAAATGACTCCACAAGCCTACTGA

Translation (438 aa):
MCKDYVYDIDIEQIAKEEQGEALKLQASTSTEVSQQQCSVPGLGEKYPTWETTKPELELLGHNPRRRRIA
SSFTIGLRGLINLGNTCFMNCIVQALTHTPILRDFFLSDRHRCEMPSPELCLVCEMSSLFRELYSGNPSP
HVPYKLLHLVWIHARHLAGYRQQDAHEFLIAALDVLHRHCKGDDVGKVASNPNHCNCIIDQIFTGGLQSD
VTCQACHGVSTTIDPCWDISLDLPGSCTSFWPMSPGRESSLNGESHIPGITTLTDCLRRFTRPEHLGSSA
KIKCGSCQSYQESTKQLTMKKLPVVACFHFKRFEHSAKQRRKITTYISFPLELDMTPFMASSKETRVNGQ
LQLPTNSANNENKYSLFAVVNHQGTLESGHYTSFIRHHRDQWFKCDDAVITKASIKDVLDSEGYLLFYHK
QVLEPEPEKVKEMTPQAY


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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