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Report for CCDS52932.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52932.1 Public Mus musculus 9 Fbxw28 23 108 98 CCDS HistoryNCBI Gene:668758Re-query CCDS DB by CCDS ID:52932.1Re-query CCDS DB by GeneID:668758See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52932.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000112040.8 ENSMUSP00000107671.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112040.8Link to Ensembl Protein Viewer:ENSMUSP00000107671.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000112040Re-query CCDS DB by Protein ID:ENSMUSP00000107671
Original member Current member NCBI NM_001177419.1 NP_001170890.1 Accepted alive Link to Nucleotide Sequence:NM_001177419.1Link to Protein Sequence:NP_001170890.1Re-query CCDS DB by Nucleotide ID:NM_001177419Re-query CCDS DB by Protein ID:NP_001170890Link to BLAST:NP_001170890.1

Chromosomal Locations for CCDS 52932.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 109323165 109323231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109326122 109326246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109326533 109326711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109328188 109328398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109329275 109329433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109330756 109330968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109337271 109337386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109338396 109338559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109338750 109338787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109339533 109339622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1362 nt):
ATGGAGATCCATTTACCTAGTGTGCCGATGATGGAAATCCTCTCCTATCTGGATGCCTACAGTTTGCTAC
AGGCTGCCCAAGTGAACAAGAACTGGAATGAACTTGCAAGCAGTGATGTCCTGTGGAGGAAGTTGTGTCA
GAAGAGATGGCTCTACTGTTACATGTTCACCCTACCGCTCCATGGCTTAGAGACATGGAAGCAGTTCTTC
TTTGACAAAACATGGCAAGAACACGCCAAGACCCGGGCAAAGCCAGAAGATTTCACTTACAAGGAATTTC
CTGTGGAGTTTGAATTTCGGGCACATCCATGGTATATCTCAAGGCATGGCTTAACAAGAAATGGACAAGA
AAAGTCTGCTGTCTGTATGACTTCCATGAACAGGATTTCTACCTGGGATATTCATGAGGGTGCTATGACC
TGGGAAAGTCCAAAACAGCCCTCCTATATCGTATGGATGACTACCCTCCCTGAGATGCAAATTGCAGTCA
CTATAGATATGCAATCAACTATCAAACTGTGGGACTGCCACAACAAGGAAGTTCTGGCGTCGAAAACGGG
CCTGTTCTTTGGCTGTAAATTACTGCAATCTGAATTTACTAAGGATGGCCCGATTGTCTTGGTAGGTGAT
GCCTGTGGTAATCTCTACATCTTTAGGATTCCTGACTTACACCTCATTTCCAAGGTGAATGTATTCCCAT
ACAGTATTGATGAACTCTACTTCTCTCCTCAGAAGAAATGGGTCTTTCTGATAGGGCACCGCCTAAATGA
CTTGACAAAGGTGTTTTACATGAGCAGCTTACTGAGGCCATCAGAATTCTCTGCCCCTGTGTCTACCGTT
CTCAAAGTTCCAGTAATCCGAAAAGTCTTCTGGACCCCAAGAAGGGAAGACAGGATAACCCTGATGTCCT
TAATTTTACCCAAAAACATCACAAAATTTGACACATTTGATATGAAGTTGGAAGGGATCGGGAACAAAGT
AACTATTCAAGGATATTTGACAGCCAGCTTCTCGCTGGCAGAAGATGAGGGGAGACCAGACTATTTTGGA
GTCAGTGATAAGGACGTGATTGTTTGTTCAACTAGATTCTCTCTCTTGCTCTTTGACATAAATGGTCTCC
GTCTGCAGACATTTCACTACTGCCCAGAAGAGATCTGGAGACTATGGGTGGACCCTGTTCATGTCATTGT
CACCTGTGATGCTGGCTCTTTGGATATATATGCATGGGAGAAGAGAAGCCTGCTACTAAGGAAGTGTTAT
CGACTACGAAATAGGAATTATCAGCAAATGTCTGGGTTGGCGAGTTCAGTGATTCTAAGCAGTGAAGAGG
CCAAATTTGGTGGTGAACACCTTTCATCCTGA

Translation (453 aa):
MEIHLPSVPMMEILSYLDAYSLLQAAQVNKNWNELASSDVLWRKLCQKRWLYCYMFTLPLHGLETWKQFF
FDKTWQEHAKTRAKPEDFTYKEFPVEFEFRAHPWYISRHGLTRNGQEKSAVCMTSMNRISTWDIHEGAMT
WESPKQPSYIVWMTTLPEMQIAVTIDMQSTIKLWDCHNKEVLASKTGLFFGCKLLQSEFTKDGPIVLVGD
ACGNLYIFRIPDLHLISKVNVFPYSIDELYFSPQKKWVFLIGHRLNDLTKVFYMSSLLRPSEFSAPVSTV
LKVPVIRKVFWTPRREDRITLMSLILPKNITKFDTFDMKLEGIGNKVTIQGYLTASFSLAEDEGRPDYFG
VSDKDVIVCSTRFSLLLFDINGLRLQTFHYCPEEIWRLWVDPVHVIVTCDAGSLDIYAWEKRSLLLRKCY
RLRNRNYQQMSGLASSVILSSEEAKFGGEHLSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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