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Report for CCDS52897.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52897.1 Public Mus musculus 9 Faim 23 108 98 CCDS HistoryNCBI Gene:23873Re-query CCDS DB by CCDS ID:52897.1Re-query CCDS DB by GeneID:23873See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52897.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000112911.8 ENSMUSP00000108532.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112911.8Link to Ensembl Protein Viewer:ENSMUSP00000108532.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000112911Re-query CCDS DB by Protein ID:ENSMUSP00000108532
Original member Current member NCBI NM_001122851.1 NP_001116323.1 Accepted alive Link to Nucleotide Sequence:NM_001122851.1Link to Protein Sequence:NP_001116323.1Re-query CCDS DB by Nucleotide ID:NM_001122851Re-query CCDS DB by Protein ID:NP_001116323Link to BLAST:NP_001116323.1

Chromosomal Locations for CCDS 52897.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 98990928 98990971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 98992101 98992233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 98992513 98992741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 98998967 98999016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 99001555 99001704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (606 nt):
ATGGCGTCTGGAGATGACAGTCCTATCTTTGAAGATGATGAAAGCCCTCTCTATAGCCTGGAAAAAATGA
CGGATCTCGTAGCTGTTTGGGACGTAGCATTAAGTGACGGAGTCCACAAGATTGAATTTGAACATGGGAC
CACATCAGGCAAGCGGGTTGTGTACGTGGATGGGAAGGAAGAGATAAGAAGAGAGTGGATGTTCAAGTTG
GTGGGCAAAGAAACGTTCTTTGTCGGAGCTGCAAAAACCAAAGCCACCATCAATATAGATGCCATAAGTG
GCTTCGCATACGAGTACACGCTGGAAATTGATGGGAAGAGCCTCAAGAAGTACATGGAGAACAGGTCAAA
GACCACCAGCACCTGGGTGCTGCGCCTGGATGGCGAGGACCTGAGAGTTGTTTTGGAAAAAGACACTATG
GACGTATGGTGCAATGGTCAGAAAATGGAGACAGCGGGCGAGTTTGTAGATGATGGGACTGAGACGCACT
TCAGCGTTGGGAACCACGGCTGTTACATAAAAGCTGTGAGCAGCGGAAAGAGGAAAGAAGGGATTATCCA
TACCCTCATTGTGGATAACAGGGAAATCCCAGAGCTCACTCAGTGA

Translation (201 aa):
MASGDDSPIFEDDESPLYSLEKMTDLVAVWDVALSDGVHKIEFEHGTTSGKRVVYVDGKEEIRREWMFKL
VGKETFFVGAAKTKATINIDAISGFAYEYTLEIDGKSLKKYMENRSKTTSTWVLRLDGEDLRVVLEKDTM
DVWCNGQKMETAGEFVDDGTETHFSVGNHGCYIKAVSSGKRKEGIIHTLIVDNREIPELTQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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