NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS52893.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52893.1 Public Mus musculus 9 Tfdp2 23 108 98 CCDS HistoryNCBI Gene:211586Re-query CCDS DB by CCDS ID:52893.1Re-query CCDS DB by GeneID:211586See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52893.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000165120.8 ENSMUSP00000132934.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000165120.8Link to Ensembl Protein Viewer:ENSMUSP00000132934.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000165120Re-query CCDS DB by Protein ID:ENSMUSP00000132934
Original member NCBI NM_001184708.1 NP_001171637.1 Updated not alive Link to Nucleotide Sequence:NM_001184708.1Link to Protein Sequence:NP_001171637.1Re-query CCDS DB by Nucleotide ID:NM_001184708Re-query CCDS DB by Protein ID:NP_001171637
Current member NCBI NM_001184708.2 NP_001171637.1 Accepted alive Link to Nucleotide Sequence:NM_001184708.2Link to Protein Sequence:NP_001171637.1Re-query CCDS DB by Nucleotide ID:NM_001184708Re-query CCDS DB by Protein ID:NP_001171637Link to BLAST:NP_001171637.1

Chromosomal Locations for CCDS 52893.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 96295017 96295127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 96297627 96297770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 96300372 96300440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 96306800 96306951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 96310522 96310688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 96317477 96317582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 96317788 96317971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (933 nt):
ATGAAGGTGTGTGAGAAAGTTCAGCGGAAAGGCACAACGTCATACAATGAGGTAGCTGATGAGCTGGTAT
CTGAGTTTACCAACTCAAATAACCATCTGGCAGCTGATTCGGCTTATGATCAGAAGAACATTAGACGAAG
AGTTTATGATGCTTTAAATGTACTAATGGCGATGAACATAATTTCAAAGGAAAAAAAAGAAATCAAGTGG
ATTGGCCTGCCTACCAATTCTGCTCAGGAATGCCAGAACCTGGAAATCGAGAAGCAGAGGCGGATAGAAC
GGATAAAGCAGAAGCGAGCCCAGCTACAAGAACTTCTCCTTCAGCAAATTGCTTTTAAAAACCTGGTACA
GAGAAATCGACAAAATGAACAACAAAACCAGGGCCCTCCAGCTGTGAATTCCACCATTCAGCTGCCATTT
ATAATCATTAATACAAGCAGGAAAACAGTCATAGACTGCAGCATCTCCAGTGACAAATTTGAATACCTTT
TTAATTTTGATAACACCTTTGAGATCCACGACGACATAGAGGTACTGAAGCGGATGGGAATGTCCTTTGG
TCTGGAGTCAGGCAAATGCTCTCTGGAGGATCTGAAAATCGCAAAATCCCTGGTTCCAAAAGCTTTAGAA
GGCTATATTACAGATATCTCCACAGGACCTTCTTGGTTAAATCAGGGACTACTTTTGAACTCTACCCAAT
CAGTTTCAAATTTAGACCCGACCACCGGTGCCACTGTACCCCAATCAAGTGTAAACCAAGGGTTGTGCTT
GGATGCTGAAGTGGCCTTAGCAACTGGGCAGCTCCCTGCCTCAAACAGTCACCAGTCCAGCAGTGCAGCC
TCTCACTTCTCGGAGTCCCGCGGCGAGACCCCCTGTTCATTCAACGATGAAGATGAGGAAGATGAAGAGG
AGGATCCCTCCTCCCCAGAATAA

Translation (310 aa):
MKVCEKVQRKGTTSYNEVADELVSEFTNSNNHLAADSAYDQKNIRRRVYDALNVLMAMNIISKEKKEIKW
IGLPTNSAQECQNLEIEKQRRIERIKQKRAQLQELLLQQIAFKNLVQRNRQNEQQNQGPPAVNSTIQLPF
IIINTSRKTVIDCSISSDKFEYLFNFDNTFEIHDDIEVLKRMGMSFGLESGKCSLEDLKIAKSLVPKALE
GYITDISTGPSWLNQGLLLNSTQSVSNLDPTTGATVPQSSVNQGLCLDAEVALATGQLPASNSHQSSSAA
SHFSESRGETPCSFNDEDEEDEEEDPSSPE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH