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Report for CCDS52892.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52892.1 Public Mus musculus 9 Tfdp2 23 108 98 CCDS HistoryNCBI Gene:211586Re-query CCDS DB by CCDS ID:52892.1Re-query CCDS DB by GeneID:211586See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52892.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000179065.7 ENSMUSP00000136817.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000179065.7Link to Ensembl Protein Viewer:ENSMUSP00000136817.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000179065Re-query CCDS DB by Protein ID:ENSMUSP00000136817
Original member NCBI NM_001184710.1 NP_001171639.1 Updated not alive Link to Nucleotide Sequence:NM_001184710.1Link to Protein Sequence:NP_001171639.1Re-query CCDS DB by Nucleotide ID:NM_001184710Re-query CCDS DB by Protein ID:NP_001171639
Current member NCBI NM_001184710.2 NP_001171639.1 Accepted alive Link to Nucleotide Sequence:NM_001184710.2Link to Protein Sequence:NP_001171639.1Re-query CCDS DB by Nucleotide ID:NM_001184710Re-query CCDS DB by Protein ID:NP_001171639Link to BLAST:NP_001171639.1

Chromosomal Locations for CCDS 52892.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 96287676 96287722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 96290580 96290627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 96294965 96295127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 96297627 96297770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 96300372 96300440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 96306800 96306951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 96310522 96310688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 96317477 96317582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 96317788 96317971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1080 nt):
ATGGTCACTCAGACTCACATAGCTGAGGCTGCTGGCTGGGTTCCCAGTGATAGAAAACGAGCTAGAGAAT
TTATAGACTCTGATTTTTCAGAAAGTAAACGAAGCAAAAAAGGAGATAAAAATGGGAAAGGCTTGAGACA
TTTTTCAATGAAGGTGTGTGAGAAAGTTCAGCGGAAAGGCACAACGTCATACAATGAGGTAGCTGATGAG
CTGGTATCTGAGTTTACCAACTCAAATAACCATCTGGCAGCTGATTCGGCTTATGATCAGAAGAACATTA
GACGAAGAGTTTATGATGCTTTAAATGTACTAATGGCGATGAACATAATTTCAAAGGAAAAAAAAGAAAT
CAAGTGGATTGGCCTGCCTACCAATTCTGCTCAGGAATGCCAGAACCTGGAAATCGAGAAGCAGAGGCGG
ATAGAACGGATAAAGCAGAAGCGAGCCCAGCTACAAGAACTTCTCCTTCAGCAAATTGCTTTTAAAAACC
TGGTACAGAGAAATCGACAAAATGAACAACAAAACCAGGGCCCTCCAGCTGTGAATTCCACCATTCAGCT
GCCATTTATAATCATTAATACAAGCAGGAAAACAGTCATAGACTGCAGCATCTCCAGTGACAAATTTGAA
TACCTTTTTAATTTTGATAACACCTTTGAGATCCACGACGACATAGAGGTACTGAAGCGGATGGGAATGT
CCTTTGGTCTGGAGTCAGGCAAATGCTCTCTGGAGGATCTGAAAATCGCAAAATCCCTGGTTCCAAAAGC
TTTAGAAGGCTATATTACAGATATCTCCACAGGACCTTCTTGGTTAAATCAGGGACTACTTTTGAACTCT
ACCCAATCAGTTTCAAATTTAGACCCGACCACCGGTGCCACTGTACCCCAATCAAGTGTAAACCAAGGGT
TGTGCTTGGATGCTGAAGTGGCCTTAGCAACTGGGCAGCTCCCTGCCTCAAACAGTCACCAGTCCAGCAG
TGCAGCCTCTCACTTCTCGGAGTCCCGCGGCGAGACCCCCTGTTCATTCAACGATGAAGATGAGGAAGAT
GAAGAGGAGGATCCCTCCTCCCCAGAATAA

Translation (359 aa):
MVTQTHIAEAAGWVPSDRKRAREFIDSDFSESKRSKKGDKNGKGLRHFSMKVCEKVQRKGTTSYNEVADE
LVSEFTNSNNHLAADSAYDQKNIRRRVYDALNVLMAMNIISKEKKEIKWIGLPTNSAQECQNLEIEKQRR
IERIKQKRAQLQELLLQQIAFKNLVQRNRQNEQQNQGPPAVNSTIQLPFIIINTSRKTVIDCSISSDKFE
YLFNFDNTFEIHDDIEVLKRMGMSFGLESGKCSLEDLKIAKSLVPKALEGYITDISTGPSWLNQGLLLNS
TQSVSNLDPTTGATVPQSSVNQGLCLDAEVALATGQLPASNSHQSSSAASHFSESRGETPCSFNDEDEED
EEEDPSSPE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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