NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS52855.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52855.1 Public Mus musculus 9 Ccpg1 23 108 98 CCDS HistoryNCBI Gene:72278Re-query CCDS DB by CCDS ID:52855.1Re-query CCDS DB by GeneID:72278See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52855.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000150826.8 ENSMUSP00000122966.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000150826.8Link to Ensembl Protein Viewer:ENSMUSP00000122966.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000150826Re-query CCDS DB by Protein ID:ENSMUSP00000122966
Original member Current member NCBI NM_001114328.2 NP_001107800.1 Accepted alive Link to Nucleotide Sequence:NM_001114328.2Link to Protein Sequence:NP_001107800.1Re-query CCDS DB by Nucleotide ID:NM_001114328Re-query CCDS DB by Protein ID:NP_001107800Link to BLAST:NP_001107800.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001107800.1 753 Q640L3-1 753 100% 0 0

Chromosomal Locations for CCDS 52855.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 72997411 72997470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72999024 72999144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72999463 72999539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 73001677 73001875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 73005641 73005892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 73010297 73010412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 73011930 73013366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2262 nt):
ATGTCTGAAAGTTCCAGCGACAGCGACTCATCTTGTGGCTGGACTGTCATCAATCATGAGGGTTCTGATA
TA
GAGATCGTGAATTCTGCCACAGCCAGTGACAACTGTGGACTGACTCTAGAATGTTCCTTAGTAGAACA
A
GAGGAGCTGCCCGTTCTTTATGTAGGGCATGGAGGTGAAGAAAGCAGCGCAAACAACACATCGTCAGTG
GGA
GAAACCATGTTGTCATCAATGAGAGAAACCAAGTCAGCAGCTGAGGTGGAGGAAGCACCTTCCCCTG
AA
GACAATGTCTATTTCGGAACTACTAGTGACGATTCGGATATTGTTACACTTGAACCACCTAAGCTGGA
A
GAAATGGGGAACCAGGAAGTTACAATTCAAGAAGCGCCCAGCTCAGATGACCTTAACATGGGCTCTTCC
TCC
AGCAGCCAGTACGCCTTCTGCCAGCCAGAACCCGTCTTTTCATCTCAGCCTAGTGATGAGGAATCCA
GT
AGCGATGACACCAGCCACGAGCCCAGCCCTGCTCCTAGACGGCGCCGCAACAGGAAGAAGACCGTTTC
T
ATCTCAGAGTCTGAGGAGCCTCCACTCGCTGAGCCGGAAGATGAGCCCTCCAAGGAGCCAAGTAAACGC
CAC
TTTAGTCGTGGTCTCAACAAGTGTGTTATCCTGGCCTTGGTGATTGCTGTCAGCATGGGATTTGGAC
AT
TTCTATGGCACAATCCAGATTCAGAAGCAGTTAGTCAGAAAGACCCACGAAGATGAGCTGGATGGTGT
G
AAGGGTTATCTCTCACAGCGCAAGCAGGAACAAGAGTCTTTTCTAGATTTCAAGTCGCTGAAAGAAAAC
CTT
GAGAGGTGTTGGACCGTTACTGAATCAGAGAAGATTACCTTTGAAACTCAGAAGAAGAACCTTGCTG
CA
GAAAACCAGTATTTACGAATATCTCTGGAGAAGGAAGAACAAGCCCTGTCTTCATTACAGGAAGAGCT
A
CGGCAACTAAGGGAGCAGATTAGATTGTTGGAGGATAAAGGCACAAGCACGCAGTTAGTTAGGGAGAAC
CAG
GTCCTTAAGCAGTACTTAGAAGTGGAAAAGCAGAAAACAGATAGCTTCCTTAGGGAAAGGGAGATGC
TC
TTGGAGGAGGCAAGGATGCTGAAAAGGGACCTGGAGAGGGAACAGCTCACAGCCATGGCTCTGCGGGC
A
GAACTTGAGCAGTTCATCCCTGGCCAGGCACAGAGCCGTGCGGAGTCTCCTAGTGTGCAGACTGAAGAG
AAG
GAAGTGGGGCTGTTACAGCAGAGGCTGGCTGAGCTGGAGCAGAAGCTCATCTTTGAGCAGCAGCGCT
CG
GATTTGTGGGAGAGACTGTACGTTGAGGCAAAGGATCAACATGGAAAGCAGGAGACAGACGGGAGGAA
G
AGAGGAAGCAGAGGAAGCCACAGGGCGAAGAGCAAGTCGAAGGAGACATTTCTGGGGACAGTTAAGGAA
ACA
TTTGATGCTATGAAGAATTCTACCAAGGAGTTTGTGAGACATCATAAAGAAAAAATCAAGCAGGCGA
AA
GAAGCTGTGAAGGAGAATCTGAAAAAATTCTCAGATTCAGTCAAATCCACTTTTCGCCATTTCAAAGA
T
ACTACCAAGAATATCTTTGATGAAAAGGGCAGCAAGAGATTCAGGGCTCCAAAAGAAGCGGCAACTGAA
AAG
ACAAGAACAGCTTATAGTTATTCCTCATACTCACAGCAGGAGGCACCAAACCAAAACCAGAATTGCA
GG
CGCCCTTCTGCACAGAGGGATGGAGGGAGAGAAAAGCCCAGTCACTCTGAAGAAATTAGAAAGAATGC
A
AATTCATATACATACAAGGCCAAGTCTGACTGCAGAGGCACCCATTCCACCAGAAGGGTTTGTTCAGGT
ATG
TTTGAATGTGCTGGACAGGAAGCCATTAGCCCTGTTAATAAGGCGAGTCCTGTTAGGATGAATGACT
TC
AAACAGCTGATTCACTGGTACTTACTCAATGAACTGGAGACTTTTCACCACTGGAAAGAACTGGATCA
G
TTTATCAGTCCGTTTTTTCCGAATGGTGTCTTTAGACATGACCAGCAGCTCTTCGCCGACTTTGTTGAT
GAT
GTGAAAGGTTACCTTAAGAGCATAAAGGAGTATCGAGTAGAGGATGGCAATCTGGAGAAGTTGGACG
GA
TGTATATATAGACACTTTGGGCATGTTTTTGCCCTGCCATTCGGACCCAGGTCGGTTTACATAAAACC
A
TGTTACTATAATAGCTTCTAA


Translation (753 aa):
MSESSSDSDSSCGWTVINHEGSDIEIVNSATASDNCGLTLECSLVEQEELPVLYVGHGGEESSANNTSSV
G
ETMLSSMRETKSAAE
VEEAPSPEDNVYFGTTSDDSDIVTLEPPKLEEMGNQEVTIQEAPSSDDLNMGSS
S
SSQYAFCQPEP
VFSSQPSDEESSSDDTSHEPSPAPRRRRNRKKTVSISESEEPPLAEPEDEPSKEPSKR
H
FSRGLNKCVILALVIAVSMGFGHFY
GTIQIQKQLVRKTHEDELDGVKGYLSQRKQEQESFLDFKSLKEN
L
ERCWTVTESEKITFETQKKNLAAENQYLRISLEKEEQALSSLQEELRQLREQIRLLEDKGTSTQLVREN
Q
VLKQYLEVEKQKTDSFLREREMLLEEARMLKRDLEREQLTAMALRAELEQFIPGQAQSRAESPSVQTEE
K
EVGLLQQRLAELEQKLIFEQQRSDLWERLYVEAKDQHGKQETDGRKRGSRGSHRAKSKSKETFLGTVKE
T
FDAMKNSTKEFVRHHKEKIKQAKEAVKENLKKFSDSVKSTFRHFKDTTKNIFDEKGSKRFRAPKEAATE
K
TRTAYSYSSYSQQEAPNQNQNCRRPSAQRDGGREKPSHSEEIRKNANSYTYKAKSDCRGTHSTRRVCSG
M
FECAGQEAISPVNKASPVRMNDFKQLIHWYLLNELETFHHWKELDQFISPFFPNGVFRHDQQLFADFVD
D
VKGYLKSIKEYRVEDGNLEKLDGCIYRHFGHVFALPFGPRSVYIKPCYYNSF




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser