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Report for CCDS52828.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52828.1 Public Mus musculus 9 Skor1 23 108 98 CCDS HistoryNCBI Gene:207667Re-query CCDS DB by CCDS ID:52828.1Re-query CCDS DB by GeneID:207667See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52828.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000116613.8 ENSMUSP00000112312.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000116613.8Link to Ensembl Protein Viewer:ENSMUSP00000112312.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000116613Re-query CCDS DB by Protein ID:ENSMUSP00000112312
Original member Current member NCBI NM_001163758.1 NP_001157230.1 Accepted alive Link to Nucleotide Sequence:NM_001163758.1Link to Protein Sequence:NP_001157230.1Re-query CCDS DB by Nucleotide ID:NM_001163758Re-query CCDS DB by Protein ID:NP_001157230Link to BLAST:NP_001157230.1

Chromosomal Locations for CCDS 52828.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 63138871 63138965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 63139498 63139563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 63140054 63140128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 63140357 63140431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 63141714 63141785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 63142244 63142354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 63143300 63143396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 63144382 63146568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2778 nt):
ATGGAGGCTCTCACCACTCAGCTGGGGCCGGGACGCGAGGGCAGCTCCTCTCCCAACTCCAAGCAAGAGC
TGCAGCCCTACTCGGGATCCAGCGCCCTTAAACCCAACCAGGTGGGCGAGACGTCGCTGTACGGGGTACC
CATCGTGTCGCTGGTCATTGATGGGCAGGAGCGCCTGTGCCTAGCCCAGATCTCCAACACCCTGCTCAAA
AACTACAGCTACAATGAGATCCACAACCGCCGCGTGGCCCTGGGCATCACATGCGTGCAATGCACGCCGG
TGCAGCTGGAGATACTGCGTCGGGCCGGGGCCATGCCCATCTCCTCTCGCCGCTGTGGTATGATCACAAA
ACGAGAGGCCGAACGCCTGTGCAAGTCGTTCCTGGGCGAGCACAAGCCCCCCAAACTGCCTGAGAACTTC
GCCTTTGACGTGGTGCACGAGTGCGCATGGGGCTCTCGGGGCAGCTTCATCCCTGCCCGTTACAACAGCT
CTCGTGCTAAGTGCATCAAGTGCGGCTACTGCAGTATGTATTTCTCTCCCAACAAGTTCATCTTCCATTC
GCACCGCACACCCGACGCCAAGTACACTCAGCCCGACGCCGCCAACTTTAACTCGTGGCGTCGGCACCTC
AAACTCAGTGACAAGTCGGCCACCGACGAACTGAGCCACGCTTGGGAGGACGTCAAGGCTATGTTTAATG
GCGGTACGCGCAAGCGGACCTTCTCCCTGCAAGGGGGCGGCGGAGGCGGCGCTAATAGCGGGTCTGGTGG
TGCAGGGAAGGGCGGCGCTGGTGGCGGTGGCGGTCCAGGGTGCGGCTCAGAGATGGCCCCAGGCCCACCG
CCCCACAAAAGTCTGCGCTGCGGTGAAGACGAGGCGGCTGGGCCTCCCGGGCCACCTCCACCGCATCCGC
AGCGCGCACTTGGCCTGGCGGCGGCAGCTAGTGGCCCTGCAGGACCTGGAGGACCTGGGGGCAGCGCAGG
GGTTCGCAGCTACCCGGTGATTCCAGTGCCCAGCAAAGGTTTTGGCCTCTTGCAAAAGCTGCCCCCGCCT
CTTTTCCCGCATCCTTACGGTTTCCCCACAGCATTCGGCCTATGTCCCAAAAAGGACGACCCAGTGTTGG
TCGCCGGAGAACCCAAGGGAGGCCCTGGCACCGGGAGCAGTGGGGGCGCTGGCACCGCCGCGGGTGCGGG
TGGCCCGGGAGCTGGCCACTTGCCCCCAGGAGCAGGGCCCGGCCCTGGTGGCGGCACAATGTTCTGGGGA
CATCAACCTTCCGGCGCAGCCAAGGACGCAGCGGCGGTAGCTGCCGCAGCTGCCGCCGCCACTGTATACC
CGACGTTTCCCATGTTCTGGCCAGCAGCCGGGAGCCTCCCGGTGCCTCCTTACCCGGCCGCTCAGAGCCA
AGCTAAGGCCGTAGCGGCCGCGGTGGCTGCGGCTGCTGCTGCAGCGGCGGCGGCGGCTGGCGGGGGCGGT
CCTGAGTCTTTGGACGGTGCCGAGCCAGCTAAAGAGGGCAGCCTCGGTACGGAGGAGCGCTGCCCGAGCG
CTCTATCCCGCGGGCCCCTGGACGAGGACGGTGCGGACGAGGCGCTGCCACCGTCTCTGGGTCCCCTGCC
CCCTCCGCCACCGCCACCTGCTCGCAAAAGCTCCTACGTGTCAGCCTTCCGACCCGTAGTTAAGGATGCA
GAGAGCATCGCTAAGCTCTACGGCAGCGCGCGCGAGGCCTATGGCTCCGGACCTGCTCGCGGGCCAGTGC
CCGGCACCGGGACCGGAGGGGGCTACGTGAGCCCGGACTTTCTGAGCGAGGGCAGCTCCAGCTATCATTC
TGCCTCGCCCGACGTGGACACCGCGGACGAACCGGAGGTGGACGTAGAGTCCAACCGCTTCCCCGACGAG
GAGGGAGCCCAGGACGACACCGAGCCCAGGGCACCCAGCACGGGAGGTGGCCCAGACGGCGACCAGCCTG
CTGGGCCCCCATCTGTTACATCCTCAGGCGCCGACGGCCCCACAGACTCTGCGGATGGCGATAGTCCTCG
CCCTCGCCGCCGCCTTGGGCCACCGCCCGCTATCAGATCCGCATTCGGGGACCTGGTGGCCGATGATGTG
GTGCGGAGAACTGAGCGGAGTCCACCAAGCGGCGGCTATGAGCTGCGAGAGCCTTGCGGGCCCCTGGGAG
GCCCCGGGGCGGCCAAGGTGTATGCGCCTGAAAGGGACGAACACGTGAAGAGTACGGCGGTGGCGGCGGC
GCTGGGGCCCGCGGCCTCTTACCTCTGCACCCCAGAGACCCACGAGCCGGATAAGGAAGACAATCACTCG
ACGACAGCCGACGACTTGGAAACCAGAAAATCCTTTTCAGACCAAAGGAGTGTCTCCCAGCCAAGCCCTG
CAAATACAGATCGAGGTGAGGATGGGCTCACTTTGGATGTCACAGGAACTCAACTGGTGGAGAAAGATAT
CGAGAACCTGGCCAGAGAAGAATTGCAGAAATTGCTTCTGGAGCAAATGGAGCTTCGGAAGAAGCTGGAG
CGGGAATTCCAGAGTCTCAAAGATAATTTTCAGGATCAAATGAAGAGGGAATTGGCTTATCGGGAAGAAA
TGGTGCAACAGCTGCAAATTGTCAGAGATACCTTGTGTAACGAACTGGACCAGGAGAGGAAGGCCCGCTA
TGCCATCCAGCAGAAATTAAAAGAAGCTCACGACGCCCTGCACCACTTCTCCTGCAAGATGCTGACACCC
CGGCACTGCACCGGCAACTGCTCCTTCAAGCCTCCGCTGCTGCCCTAG

Translation (925 aa):
MEALTTQLGPGREGSSSPNSKQELQPYSGSSALKPNQVGETSLYGVPIVSLVIDGQERLCLAQISNTLLK
NYSYNEIHNRRVALGITCVQCTPVQLEILRRAGAMPISSRRCGMITKREAERLCKSFLGEHKPPKLPENF
AFDVVHECAWGSRGSFIPARYNSSRAKCIKCGYCSMYFSPNKFIFHSHRTPDAKYTQPDAANFNSWRRHL
KLSDKSATDELSHAWEDVKAMFNGGTRKRTFSLQGGGGGGANSGSGGAGKGGAGGGGGPGCGSEMAPGPP
PHKSLRCGEDEAAGPPGPPPPHPQRALGLAAAASGPAGPGGPGGSAGVRSYPVIPVPSKGFGLLQKLPPP
LFPHPYGFPTAFGLCPKKDDPVLVAGEPKGGPGTGSSGGAGTAAGAGGPGAGHLPPGAGPGPGGGTMFWG
HQPSGAAKDAAAVAAAAAAATVYPTFPMFWPAAGSLPVPPYPAAQSQAKAVAAAVAAAAAAAAAAAGGGG
PESLDGAEPAKEGSLGTEERCPSALSRGPLDEDGADEALPPSLGPLPPPPPPPARKSSYVSAFRPVVKDA
ESIAKLYGSAREAYGSGPARGPVPGTGTGGGYVSPDFLSEGSSSYHSASPDVDTADEPEVDVESNRFPDE
EGAQDDTEPRAPSTGGGPDGDQPAGPPSVTSSGADGPTDSADGDSPRPRRRLGPPPAIRSAFGDLVADDV
VRRTERSPPSGGYELREPCGPLGGPGAAKVYAPERDEHVKSTAVAAALGPAASYLCTPETHEPDKEDNHS
TTADDLETRKSFSDQRSVSQPSPANTDRGEDGLTLDVTGTQLVEKDIENLAREELQKLLLEQMELRKKLE
REFQSLKDNFQDQMKRELAYREEMVQQLQIVRDTLCNELDQERKARYAIQQKLKEAHDALHHFSCKMLTP
RHCTGNCSFKPPLLP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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