NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS52818.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52818.1 Public Mus musculus 9 Gramd2a 23 108 98 CCDS HistoryNCBI Gene:546134Re-query CCDS DB by CCDS ID:52818.1Re-query CCDS DB by GeneID:546134See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52818.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000098661.9 ENSMUSP00000096258.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000098661.9Link to Ensembl Protein Viewer:ENSMUSP00000096258.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000098661Re-query CCDS DB by Protein ID:ENSMUSP00000096258
Original member Current member NCBI NM_001033498.2 NP_001028670.1 Accepted alive Link to Nucleotide Sequence:NM_001033498.2Link to Protein Sequence:NP_001028670.1Re-query CCDS DB by Nucleotide ID:NM_001033498Re-query CCDS DB by Protein ID:NP_001028670Link to BLAST:NP_001028670.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028670.1 312 Q3V3G7-2 312 100% 0 0

Chromosomal Locations for CCDS 52818.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 59707980 59708095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 59709452 59709509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 59709862 59709937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 59710502 59710605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 59711166 59711264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 59711545 59711616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 59712084 59712146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 59713796 59713940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 59714177 59714273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 59715923 59716027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 59716208 59716211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (939 nt):
ATGGACACATTTCCCTCTAGCAACCAACAAATGCACGGGAAGATGGCACCTCTGAAGAGCCATGTGCCCT
GCACGGAGAAACCAGGAAAGGTCCAGGAGCCTCCAGATGATGGCAGTCTGCACTGGTCAGAAGGCTCAAA
GGGTGAAGACATAAAGAAGTATAGCCGGGAAGGGACACTACGGAGCAAATACAACCAACAATACCACAAG
CTGTTTAAAGATATCCCGTTGGAGGAGGTGGTCCTCAAAGTGTGTTCCTGTGCCCTCCAGAGAGACCTCC
TTCTCCATGGTCGGCTCTATATCTCTCCCAACTGGCTTTGCTTCCATGCCAGCCTCTTTGGCAAGGATAT
CAAGGTGGTCATTCCTGTGGTATCTGTGCAATTGATCAAAAAACACAAGATGGCACGACTCCTTCCCAAT
GGACTGGCCATCACCACAAACACCAGCCAGAAGTATGTCTTTGTGTCTCTGCTTTCCCGGGACAGTGTAT
ATGACATGCTGAGGAGGGTCTGCACTCACCTGCAGCCTTCCAGCAAGAAGAGTCTGAGTATAAGGAAATT
TCCGGAGGAAGCCGAGTGCGAGTCCCCGGAAGTCCTTATCCCCGAGATGAAGTGGAGAAAAGCATGCTCA
GCCCCCGCATCCCTGTCACTCCCAGACAGCATCTCTTGTATCTCTCAGATCCCGACAGACTCCACAGATA
GCTGCTTCCCCTCCAGGAAGCCTCCAGGGTCTGAGGCCGTCTGTGAGAAAGATGCATTGGAGGAAGAGCC
CAGCACGGACCAGGAACTGAGGCTGTGGGATTCTCGGCTCCTCAAGGTCATCTTTGTGATGATCTGCTTT
CTAGTCCTGTCCTCGTCCTATCTGGCATTCCGAATCTCCAGGCTGGAACAGCAATTATGTTCCCTGAGCT
GGGGCAGTCCACTCCCAAGGGACAGGTAA

Translation (312 aa):
MDTFPSSNQQMHGKMAPLKSHVPCTEKPGKVQEPPDDGSLHWSEGSKGEDIKKYSREGTLRSKYNQQYHK
LFKDIPLEEVVLKVCSCALQRDLLLHGRLYISPNWLCFHASLFGKDIKVVIPVVSVQLIKKHKMARLLPN
GLAITTNTSQKYVFVSLLSRDSVYDMLRRVCTHLQPSSKKSLSIRKFPEEAECESPEVLIPEMKWRKACS
APASLSLPDSISCISQIPTDSTDSCFPSRKPPGSEAVCEKDALEEEPSTDQELRLWDSRLLKVIFVMICF
LVLSSSYLAFRISRLEQQLCSLSWGSPLPRDR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH