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Report for CCDS52810.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52810.1 Public Mus musculus 9 Lman1l 23 108 98 CCDS HistoryNCBI Gene:235416Re-query CCDS DB by CCDS ID:52810.1Re-query CCDS DB by GeneID:235416See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52810.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000093832.10 ENSMUSP00000091352.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000093832.10Link to Ensembl Protein Viewer:ENSMUSP00000091352.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000093832Re-query CCDS DB by Protein ID:ENSMUSP00000091352
Original member Current member NCBI NM_199222.3 NP_954692.2 Accepted alive Link to Nucleotide Sequence:NM_199222.3Link to Protein Sequence:NP_954692.2Re-query CCDS DB by Nucleotide ID:NM_199222Re-query CCDS DB by Protein ID:NP_954692Link to BLAST:NP_954692.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_954692.2 505 Q8VCD3-1 505 100% 0 0

Chromosomal Locations for CCDS 52810.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 57607148 57607280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57608206 57608333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57609162 57609285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57609967 57610034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57611040 57611191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57611749 57611881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57612573 57612628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57613593 57613716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57614078 57614177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57615576 57615634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57615734 57615841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57615940 57616094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57620493 57620670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1518 nt):
ATGCTGGAGATCAGAGGCCTCTCACCTTCCCTCTGCCTCCTTTCCCTGTTGCTGGTTCTGCACGGTGCTG
AAAGGAGCCAGCCCCCTCCTCGACGCAGGTTTGAGTACAAGCTCAGCTTCAAGGGACCAAGACTGGCAGT
TCCTGGGGCTGGGATACCCTTCTGGAGCCACCATGGAGACGCCATCCTAGGCTTAGAGGAAGTGCGGCTG
GTTCCATCCATGAAGAACCGGAGCGGTGCCGTGTGGAGCAACATCTCTGTCTCCTTCCCTTCCTGGGAGG
TAGAGATGCAGATGAGAGTGACTGGACCAGGACGCCGGGGAGCCCAGGGTGTGGCCATGTGGTACACCAA
GGACAGGGCTCAAGTCGGCTCTGTTGTAGAGGAGCTAGCCTCATGGGATGGCATCGGGATCTACTTTGAT
TCCTCCACCAGTGATGTCCAGGACAGCCCTGTCATCCGAGTGCTGGCCAGTGATGGGCATGACCTCCAGG
AGCAGTCTGGGGATGGAAATGTCCGGGAGCTTGGCTCCTGTCACAGGGACTTCAGGAACCGGCCATTCCC
CTTCCGAGCTCGGGTCACCTACTGGAGGCAGAGGCTGCGTGTGTCTTTGAGTGGAGGCCTTACTCCTAAG
GACCCTGAAGAGGTCTGTGTTGATGTGGAGCCCCTGTTTTTAGCCCCTGGAGGCTTCTTTGGGGTCTCAG
CAGCCACTGGCACCTTAGCAGCAGATGACCATGACGTCCTGTCCTTCCTGACCTTCAGTCTGAGGGAACC
AGGTCCAGAGGAAACCCCCCAGCCATTCATGGAGAAGGATCAGTTGCTCCTGGCCAGGAAGCTGGAAGAA
CTGAAGGCAAGGCTGGCCCTGGGCACCAGAGAGGCTAGCATACCACCACTGAATCCCAAAGCCCAGGAAG
AAGGTGAAAGGTTCTTTAACCTGGAGGATACGCTGGGCAGACAAAGCCAGATCCTACAGGCCCTCCAGGC
TCTCTCCAGGCAGATGGCCCAGGCTGAGAAGCACTGGAAACAGCAGCTGGGGTCTACAGTCCAAGTCCGG
CCTGAGGGAGGCTGGAACACTGCCAAGGTCAGCACCCTGCTCTATGGACAGCGGACCCTGATCCAGGCCC
TGCAAGAGATGAGGGAAGCAGCTGCCCGGATGGCTTCAGGAGCACACGTCTTCTACCTGCCTGTGGGCAC
TAAGCATCACTTTTTTGAACTGGACCATATCCTCAGCCTCCTGCAGAAGGACCTCCGGGGTCTGGTGAAG
AAGACAGCCAAGGCCCCTCGCCCATCTGGCTGGCTTCTAGGATCCTCCACATGTCTGCACACCAGCATCT
TCCTGTTCTTCCTCCTACTCCAGACTGTAGGCTTCTTCTGCTACGTGAACTTCAGCAGGCAGGAGCTGGA
CAAGAGGCTTCAGGAGTACCTGTCCACAGGAAGCCTTTCTCTAGAGCCTGCATTACCCATCACCAGGACG
ATAGGGGTTCTGAGGAGACAGCCCATCTCCCCCAGCATGCAAGCCTGA

Translation (505 aa):
MLEIRGLSPSLCLLSLLLVLHGAERSQPPPRRRFEYKLSFKGPRLAVPGAGIPFWSHHGDAILGLEEVRL
VPSMKNRSGAVWSNISVSFPSWEVEMQMRVTGPGRRGAQGVAMWYTKDRAQVGSVVEELASWDGIGIYFD
SSTSDVQDSPVIRVLASDGHDLQEQSGDGNVRELGSCHRDFRNRPFPFRARVTYWRQRLRVSLSGGLTPK
DPEEVCVDVEPLFLAPGGFFGVSAATGTLAADDHDVLSFLTFSLREPGPEETPQPFMEKDQLLLARKLEE
LKARLALGTREASIPPLNPKAQEEGERFFNLEDTLGRQSQILQALQALSRQMAQAEKHWKQQLGSTVQVR
PEGGWNTAKVSTLLYGQRTLIQALQEMREAAARMASGAHVFYLPVGTKHHFFELDHILSLLQKDLRGLVK
KTAKAPRPSGWLLGSSTCLHTSIFLFFLLLQTVGFFCYVNFSRQELDKRLQEYLSTGSLSLEPALPITRT
IGVLRRQPISPSMQA


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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