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Report for CCDS52809.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52809.1 Public Mus musculus 9 Ulk3 23 108 98 CCDS HistoryNCBI Gene:71742Re-query CCDS DB by CCDS ID:52809.1Re-query CCDS DB by GeneID:71742See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52809.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000053230.6 ENSMUSP00000059947.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000053230.6Link to Ensembl Protein Viewer:ENSMUSP00000059947.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000053230Re-query CCDS DB by Protein ID:ENSMUSP00000059947
Original member Current member NCBI NM_027895.1 NP_082171.1 Accepted alive Link to Nucleotide Sequence:NM_027895.1Link to Protein Sequence:NP_082171.1Re-query CCDS DB by Nucleotide ID:NM_027895Re-query CCDS DB by Protein ID:NP_082171Link to BLAST:NP_082171.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082171.1 472 Q3U3Q1-1 472 100% 0 0

Chromosomal Locations for CCDS 52809.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 57589585 57589686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57590324 57590464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57590661 57590781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57591214 57591318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57591994 57592137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57592331 57592413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57592819 57592974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57593162 57593267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57593458 57593498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57593751 57593853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57593982 57594046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57594134 57594212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57594284 57594324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57594607 57594654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57594783 57594849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57594943 57594959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1419 nt):
ATGGCTGGGCCCAGCTGGGGTCTCCCTCGGCTGGACGGTTTCATCCTTACCGAGCGCCTGGGCAGTGGCA
CGTACGCCACGGTGTACAAGGCCTACGCCAAGAAGGATACTCGGGAAGTGGTAGCCATAAAATGCGTGGC
CAAGAAGAGTCTCAACAAGGCGTCAGTGGAAAACCTCCTGACTGAGATTGAGATCCTCAAGGGCATTCGG
CACCCCCATATCGTGCAGCTGAAAGACTTCCAGTGGGACAATGACAATATCTACCTCATCATGGAGTTCT
GTGCAGGGGGTGACCTGTCTCGCTTCATTCATACCCGCAGGATCCTGCCTGAGAAGGTGGCCCGTGTTTT
CATGCAGCAGTTGGCTAGTGCCCTGCAGTTCCTGCATGAACGAAACATCTCTCACTTGGATCTGAAACCG
CAGAACATCCTGCTGAGCTCTTTGGAGAAGCCCCACCTGAAACTGGCAGACTTTGGCTTTGCCCAGCACA
TGTCCCCGTGGGACGAAAAACACGTGCTCCGTGGCTCCCCGCTCTATATGGCTCCTGAGATGGTGTGTCG
GCGGCAGTATGATGCGCGTGTGGACCTCTGGTCTGTGGGGGTGATCCTGTACGAAGCCCTCTTTGGGCAG
CCCCCCTTTGCCTCCAGATCGTTCTCAGAGCTAGAAGAAAAGATTCGCAGCAATCGGGTGATTGAGCTCC
CTCTTCGGCCCCAACTCTCCCTAGACTGCCGGGACCTGTTGCAGCGACTTCTAGAGCGGGACCCCGCCCG
TCGAATCTCCTTCAAGGACTTCTTTGCCCATCCCTGGGTGGACCTGGAGCACATGCCCAGTGGGGAGAGC
CTGGCACAGGCAAGGGCCCTTGTGGTGGAGGCTGTGAAGAAGGACCAGGAGGGGGATGCTGCCGCTGCCC
TGTCGCTCTACTGCAAGGCTCTGGACTTCTTTGTACCTGCGCTACACTACGAAGTGGATGCCCAGAGGAA
GGAGGCAATTAAGGCGAAGGTGGGACAGTATGTGTCCCGGGCAGAGGAGCTCAAAGCCATTGTCTCCTCC
TCCAATCAGGCCCTGCTAAGACAGGGCACAACTGTCCAAGAGCTGCTTCGAGAGATGGCCCGTGACAAAC
CACGCCTCCTGGCTGCCCTGGAAGTGGCCTCAGCTGCCCTGGCCAAGGAGGAGGAAGCTGGCAAAGAGCA
GGATGCCCTGGACCTGTACCAGCACAGCCTCGGGGAGCTGCTAGTGCTGTTGGCAGCAGAGGCCCCAGGC
CGAAGGCGGGAGCTCCTTCACACCGAGGTTCAGAACCTCATGGCTCGAGCTGAATACCTGAAGGAGCAGA
TCAAGATAAGGGAGTCTCACTGGGAAGCGGAGAGTCTGGACAAAGAGGGGCTGTCGGAGTCTGTTCGTAG
TTCTTGCACACTGCAGTGA

Translation (472 aa):
MAGPSWGLPRLDGFILTERLGSGTYATVYKAYAKKDTREVVAIKCVAKKSLNKASVENLLTEIEILKGIR
HPHIVQLKDFQWDNDNIYLIMEFCAGGDLSRFIHTRRILPEKVARVFMQQLASALQFLHERNISHLDLKP
QNILLSSLEKPHLKLADFGFAQHMSPWDEKHVLRGSPLYMAPEMVCRRQYDARVDLWSVGVILYEALFGQ
PPFASRSFSELEEKIRSNRVIELPLRPQLSLDCRDLLQRLLERDPARRISFKDFFAHPWVDLEHMPSGES
LAQARALVVEAVKKDQEGDAAAALSLYCKALDFFVPALHYEVDAQRKEAIKAKVGQYVSRAEELKAIVSS
SNQALLRQGTTVQELLREMARDKPRLLAALEVASAALAKEEEAGKEQDALDLYQHSLGELLVLLAAEAPG
RRRELLHTEVQNLMARAEYLKEQIKIRESHWEAESLDKEGLSESVRSSCTLQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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