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Report for CCDS52769.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52769.1 Public Mus musculus 9 Slc37a2 23 108 98 CCDS HistoryNCBI Gene:56857Re-query CCDS DB by CCDS ID:52769.1Re-query CCDS DB by GeneID:56857See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52769.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000161114.1 ENSMUSP00000124569.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000161114.1Link to Ensembl Protein Viewer:ENSMUSP00000124569.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000161114Re-query CCDS DB by Protein ID:ENSMUSP00000124569
Original member NCBI NM_001145960.1 NP_001139432.1 Updated not alive Link to Nucleotide Sequence:NM_001145960.1Link to Protein Sequence:NP_001139432.1Re-query CCDS DB by Nucleotide ID:NM_001145960Re-query CCDS DB by Protein ID:NP_001139432
Current member NCBI NM_001145960.2 NP_001139432.1 Accepted alive Link to Nucleotide Sequence:NM_001145960.2Link to Protein Sequence:NP_001139432.1Re-query CCDS DB by Nucleotide ID:NM_001145960Re-query CCDS DB by Protein ID:NP_001139432Link to BLAST:NP_001139432.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001139432.1 506 Q9WU81-2 506 100% 0 0

Chromosomal Locations for CCDS 52769.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 37233079 37233109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 37233310 37233374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 37233620 37233717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 37233842 37233920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 37234158 37234231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 37234393 37234441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 37235085 37235170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 37235481 37235543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 37236879 37236969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 37237300 37237452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 37237737 37237774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 37238216 37238382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 37239131 37239207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 37239619 37239754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 37241092 37241170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 37241289 37241382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 37241879 37241960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 37255299 37255357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1521 nt):
ATGCGGTCCTCCCTGGCTCCTGGTGTCTGGTTCCTTCGCGCCTTCTCTAGGGACAGCTGGTTCCGTGGCT
TCATCCTGCTGCTCACCTTCCTCATTTATGCCTGTTATCACATGTCCAGAAAGCCCATCAGCATCGTCAA
GAGCCGCCTGCACCAGAACTGCTCAGAGATGGTCAGACCTGTTAATGACACCCACGATCTCAATGATACC
ACCTGGTGCAGCTGGAGTCCATTCGACAAAGATGACTACAAGGAGTTACTAGGAGCTGTGGACAATGCCT
TCCTAGTGGCTTATGCCATTGGCATGTTTATTAGTGGAATCTTTGGGGAGCGGCTGCCCCTGCGTTACTA
CCTCTCGGCTGGAATGGTGCTAAGTGGCCTATTCACCTCCCTCTTTGGCCTGGGGTACTTCTGGAATATC
CACATGCTCTGGTACTTTGTGCTCATCCAGATCTGCAACGGGCTTGTGCAGACTACAGGCTGGCCATCTG
TGGTGACCTGTGTTGGCAACTGGTTTGGGAAGGGAAAGCGGGGATTCATCATGGGCATCTGGAACTCTCA
CACATCTGTGGGCAACATTCTGGGCTCTCTGATTGCTGGAGTCTGGGTGAACCAGCACTGGGGCCTGTCA
TTCATCGTGCCTGGCATTATCACTGCTATCATGGGTGTCATCACCTTCCTCTTTCTTATTGAATATCCAG
AAGATGTGGACTGTACCCCTCCTCGGCATCATGATGACCCGGAGAAGGAACAGGACAACCCTGAGGATCC
TGTGAATAGTCCCTACAGCAGCAGGGAGAGTAATGTGGACATTGCAGCCAGCTCCTCCAAGGAGCAGGGC
CCTGAGCCTGAAGCCATCAGTTTCCTGGGGGCACTCAGAATTCCGGGAGTGATCGAGTTCTCTTTATGTC
TGCTCTTTGCCAAGTTGGTCAGCTATACCTTTCTCTACTGGCTGCCCTTGTACATCTTCAATGTGGCTCA
CTTTAGTGCCAAGGAGGCTGGGGACCTATCCACGCTTTTTGATGTTGGTGGCATCATAGGTGGCATCATG
GCAGGGCTCATCAGCGACTACACCAATAGCAGGGCCACCACTTGCTGCATCATGCTGATCTTGGCTGCTC
CCATGATGTTCCTGTACAACTACATTGGCCAGAATGGGATAACCAGTTCCATAGTGATGTTAATTATCTG
TGGGGTCCTGGTCAATGGCCCTTACGCACTCATCACGACAGCGGTCTCTGCTGACCTGGGCACACATGAG
AGCCTGAAGGGTAACGCCAAGGCCCTCTCCACTGTCACGGCCATTATCGACGGCACTGGTTCCATAGGTG
CGGCTCTGGGGCCCCTACTGGCCGGGCTCATTTCCCCGACAGGCTGGAACAATGTGTTCTACATGCTCAT
CTCTGCCGACGTCTTGGCTTGCTTGCTCCTCTGCAGGTTGGTGTACAAAGAGATCCTGGCCTGGAAGACG
GCCTGCGGCAGAAGCAGTGGCTCTAGTCTGGCCCTAACCCACCCGCGATAG

Translation (506 aa):
MRSSLAPGVWFLRAFSRDSWFRGFILLLTFLIYACYHMSRKPISIVKSRLHQNCSEMVRPVNDTHDLNDT
TWCSWSPFDKDDYKELLGAVDNAFLVAYAIGMFISGIFGERLPLRYYLSAGMVLSGLFTSLFGLGYFWNI
HMLWYFVLIQICNGLVQTTGWPSVVTCVGNWFGKGKRGFIMGIWNSHTSVGNILGSLIAGVWVNQHWGLS
FIVPGIITAIMGVITFLFLIEYPEDVDCTPPRHHDDPEKEQDNPEDPVNSPYSSRESNVDIAASSSKEQG
PEPEAISFLGALRIPGVIEFSLCLLFAKLVSYTFLYWLPLYIFNVAHFSAKEAGDLSTLFDVGGIIGGIM
AGLISDYTNSRATTCCIMLILAAPMMFLYNYIGQNGITSSIVMLIICGVLVNGPYALITTAVSADLGTHE
SLKGNAKALSTVTAIIDGTGSIGAALGPLLAGLISPTGWNNVFYMLISADVLACLLLCRLVYKEILAWKT
ACGRSSGSSLALTHPR


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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