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Report for CCDS52764.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52764.1 Public Mus musculus 9 Pate12 23 108 98 CCDS HistoryNCBI Gene:639025Re-query CCDS DB by CCDS ID:52764.1Re-query CCDS DB by GeneID:639025See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 52764.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000041537.6 ENSMUSP00000048154.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000041537.6Link to Ensembl Protein Viewer:ENSMUSP00000048154.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000041537Re-query CCDS DB by Protein ID:ENSMUSP00000048154
Original member Current member NCBI NM_001167586.2 NP_001161058.1 Accepted alive Link to Nucleotide Sequence:NM_001167586.2Link to Protein Sequence:NP_001161058.1Re-query CCDS DB by Nucleotide ID:NM_001167586Re-query CCDS DB by Protein ID:NP_001161058Link to BLAST:NP_001161058.1

Chromosomal Locations for CCDS 52764.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 36431884 36431944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 36432784 36432897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 36433353 36433477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (300 nt):
ATGGGAAAGCACATCTTGCAGCTCCTGCTGGTCCTGTCTTTGCTGGTGATGTCCTCGCAAGCTTTGACAT
GTATCACGTGTGATAGGATCAATTCTCAGGGGATTTGTGAGAGTGGAGAAGGTTGCTGTCAGGCTAAACC
TGGAGAGAAATGTGCCTCGCTCATAACCCTTAAAGATGGCAAAATTCAGTTTGGAAACCAAAGATGTGCT
AACATTTGCTTCACTGGGACTGTGCAGACTGGAGATCAAACAGTAAAAATGAAGTGCTGCAAGAAAAGGT
CTTTCTGCAATGAACTATAA

Translation (99 aa):
MGKHILQLLLVLSLLVMSSQALTCITCDRINSQGICESGEGCCQAKPGEKCASLITLKDGKIQFGNQRCA
NICFTGTVQTGDQTVKMKCCKKRSFCNEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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