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Report for CCDS52658.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52658.1 Public Mus musculus 8 Lrrc36 23 108 98 CCDS HistoryNCBI Gene:270091Re-query CCDS DB by CCDS ID:52658.1Re-query CCDS DB by GeneID:270091See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 52658.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000109355.8 ENSMUSP00000104979.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109355.8Link to Ensembl Protein Viewer:ENSMUSP00000104979.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000109355Re-query CCDS DB by Protein ID:ENSMUSP00000104979
Original member Current member NCBI NM_001170788.1 NP_001164259.1 Accepted alive Link to Nucleotide Sequence:NM_001170788.1Link to Protein Sequence:NP_001164259.1Re-query CCDS DB by Nucleotide ID:NM_001170788Re-query CCDS DB by Protein ID:NP_001164259Link to BLAST:NP_001164259.1

Chromosomal Locations for CCDS 52658.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 105413641 105413710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105425257 105425384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105426758 105426950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105427727 105427823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105431525 105431613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105443734 105443861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105446208 105446256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105449381 105449827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105452007 105452299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105455194 105455359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105457427 105457575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105458396 105458519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105461018 105461132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105463743 105463968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2274 nt):
ATGGCGGAGCAGTGGGATCTGGACGAGGAGTGCCTCCGCCGCCTGGGGGCGCTGACCCTGGAGCAGCCGG
AACTGGTGGAGTCTCTCTCATTGCAGGGATCTTATGCCGGAAAAATCCACTCTATTGGTGATGCCTTCAG
AAATTTCAAAAGTCTCCGATCCTTAGATTTATCAAGGAATTTGATCACTAGTCTAAAGGGAATCCAGTAT
TTATGCTCACTCCAAGAGCTGAACTTATATTATAACAACATTCCTTCATTAGTGGAGGTGTCCCGACTAC
AGCCCTTACCCTTCCTCAAAGAACTAGATTTGAGACTCAATCCTGTTGTAAGGAAAGATACAGATTATAG
GCTCTTTGCCGTGTACACGCTGCAAACGCTGGAAAAACTGGATGACCGAGCCGTCCGTGACAGCGAGAGG
AGAGCGGCCAAGCTACATTTCAGTCAGTTGGGCAACAGTGAAAATTTTCTCTTAGAGGTGGAAAAAAGCT
CTAGGGAGAAGACAATGAAAAACTGTGTGACAGATGAGGGCCCCGCGTCACACGTCAGTCCTGAGGTTGA
TGCCAGGATGGAAACAGACGCAAACAAAGGACTTTTTATTCCCTTCCCCAACCGGGAAATAAAGGATTCC
CTAACCAGCATTTGTGCAGCCCAGGGCAGTGGCACACCAGCTCAGAAATTAGACGTTTTTCCGCTGGGGA
CACAGATGCAGGAAGCAACAAGAAGGGAGACAAGTGACCTTCACCAGGAAGATGGATTAGAACTCAGGCT
CTACCCGCCTCCTCAGAGCACAGTCCGATCTCCAGAGAAGATGACGAGAGATGGATACCGAGTGTCTTTC
CTAGACACTAAGTCTTCAGGTTCTTCTCCAGAAAAGGACTTGATACCAAAACCTGATGCCTATCCATGTA
CCCATGATGCCTCCTTGGGTAAACGCCTGGATGTGGGTGATTCTAACCAGATCCTTCCCTGTCAGTTACC
TTCTGAGGTTTGTCTGGACCACTATGGTAATCAATATTCTCAAACTCTTTGCCTGCACGGAAGTCTTGTC
AAAAGGGCTCAGAAGGGCAAGAACTACCGAGAACATAGCATAAAGCCTTCACAGGACAAAAAGGCCACCA
CATCCCATCCCTGTGGAGACTTACTAACATCCCTGTCAAACCCCGACTCCAGCACGGGAAGGCTGCTGAG
GCTTAGCTCAGATCTCTATGCCACAACCCATTTCAACAGTGACCCCGCTCTGCTGGCCAACGTGGAGCAA
CAGCTTTCCAGCCTCCGTGACTTTACACCAGCACCTGGTTCTTTCCCAAGCAGCCCTGCCCTAGGAAATT
CTCTGCGGACACTGCTGCTGCCTCCTGGGACTCCAGAAAACAGGGAGATTCCGACTAAGAGGTCATTAAG
CCCTTCAAGGAGAGGATTCAAGCGGAAGGACGGTATCCTTGCCAACCCGAGTCTGAAGCGTGGTTTCCAA
GATGCTACAGGCAGCGAGGCGCAACCTCTCTCTAGTGACCTGGGCAGTTTGCATGGTTTATCAGGAAACC
ACAGTCCTCCGATCTCTGCCAGAACCCCCCACGTGGCCACTGTCCTCAGACAGCTCCTGGAGCTGGTGGA
CAAGCACTGGAATGGCTCTGGCTCCCTCCTCCTGGACAAGAAGTTTCTCGGTCCCGCCAGAGACTTGCTC
CTGTCATTGGTGGTCCCTGCACCCTCTCAGCAGTGGCGGCGCTCGAAGCTTGACGATAAGGCAGGGAAAG
CCTTGTGCTGGAGGGAGACCGAGCTAAAGGAAGCAGGGCTGCTAGTTCCTAACGATGTGGAAAGTCTGAA
GCAAAAACTGGTCAAAGTGCTGGAGGAAAACCTTGTTCTGTCAGAAAAAATTCAGCAGTTGGAGGGAACC
GCTGCCACCTCGATTGTGAGTGGGCACCCATCACACACACACGATGAGCTTCTGCGCAAAAACCAACAGC
TGACCATACAGGTGGCTTGCCTGACCCAGGAGCTGACTCAGCTGAAAAGACTGGAGGAGACAGTTGCTCT
TCTCCATGAGAGTCAGAGGTCCCTGGTGGTAACTAATGAGTATCTGCTGCAGCAGCTGCATAAAGAGCAG
AAAGGTTATTCCGGGAAATCTCTCCTGCCTCCCGAGAAGAGTCATCCTTTGGGGAGATCGTCGCCCTTTG
GGAAAAGCACGCTGTCTTCCTCCTCACCAATGGTACACGACACGGGTCAGTACCTAATACAGAGTGTCTC
AGAAGCCGACCCAGAGCCTAGTTTGTGGAGCTAG

Translation (757 aa):
MAEQWDLDEECLRRLGALTLEQPELVESLSLQGSYAGKIHSIGDAFRNFKSLRSLDLSRNLITSLKGIQY
LCSLQELNLYYNNIPSLVEVSRLQPLPFLKELDLRLNPVVRKDTDYRLFAVYTLQTLEKLDDRAVRDSER
RAAKLHFSQLGNSENFLLEVEKSSREKTMKNCVTDEGPASHVSPEVDARMETDANKGLFIPFPNREIKDS
LTSICAAQGSGTPAQKLDVFPLGTQMQEATRRETSDLHQEDGLELRLYPPPQSTVRSPEKMTRDGYRVSF
LDTKSSGSSPEKDLIPKPDAYPCTHDASLGKRLDVGDSNQILPCQLPSEVCLDHYGNQYSQTLCLHGSLV
KRAQKGKNYREHSIKPSQDKKATTSHPCGDLLTSLSNPDSSTGRLLRLSSDLYATTHFNSDPALLANVEQ
QLSSLRDFTPAPGSFPSSPALGNSLRTLLLPPGTPENREIPTKRSLSPSRRGFKRKDGILANPSLKRGFQ
DATGSEAQPLSSDLGSLHGLSGNHSPPISARTPHVATVLRQLLELVDKHWNGSGSLLLDKKFLGPARDLL
LSLVVPAPSQQWRRSKLDDKAGKALCWRETELKEAGLLVPNDVESLKQKLVKVLEENLVLSEKIQQLEGT
AATSIVSGHPSHTHDELLRKNQQLTIQVACLTQELTQLKRLEETVALLHESQRSLVVTNEYLLQQLHKEQ
KGYSGKSLLPPEKSHPLGRSSPFGKSTLSSSSPMVHDTGQYLIQSVSEADPEPSLWS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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