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Report for CCDS52653.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52653.1 Public Mus musculus 8 Ces3b 23 108 98 CCDS HistoryNCBI Gene:13909Re-query CCDS DB by CCDS ID:52653.1Re-query CCDS DB by GeneID:13909See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52653.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000074403.12 ENSMUSP00000074004.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000074403.12Link to Ensembl Protein Viewer:ENSMUSP00000074004.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000074403Re-query CCDS DB by Protein ID:ENSMUSP00000074004
Original member Current member NCBI NM_001159415.1 NP_001152887.1 Accepted alive Link to Nucleotide Sequence:NM_001159415.1Link to Protein Sequence:NP_001152887.1Re-query CCDS DB by Nucleotide ID:NM_001159415Re-query CCDS DB by Protein ID:NP_001152887Link to BLAST:NP_001152887.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001152887.1 521 Q8VCU1-2 521 100% 0 0

Chromosomal Locations for CCDS 52653.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 105083775 105083865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105084945 105085149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105085257 105085395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105085556 105085689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105086558 105086711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105086822 105086926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105088419 105088511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105088607 105088747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105090704 105090784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105091511 105091658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105092895 105092973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105093067 105093262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1566 nt):
ATGACAAATATGAGGACAATGATACCAGCTGGGTCCAGTGTCCTAGTCTGGGTGACCTGTCTGCTCCTGG
CATTTGTTACCACAGTCACTGGACCCAAAGTCATTCAGCCTGAAGTGGATACCCCCCTGGGTCGTGTTCG
AGGCCGGCAGGTGGGTGTGAAGGACACAGACCGCATGGTAAATGTCTTCCTGGGCATCCCCTTTGCTCAA
GCACCAGTGGGACCTCTTCGGTTCTCAGCTCCACTCCCACCACAGCCCTGGGAAGGTGTGAGAGATGCCA
GCATCAATCCCCCAATGTGCCTTCAGGATGTAGAGAAAATGATCAACAGCAGATTTGGCCTCAATGAAAA
GATTAAAATCTTCCCCATTTCTGAGGACTGCCTGACCCTCAACATCTACAGCCCCACTGAGATCACTGCA
GGGGACAAAAGGCCGGTCATGGTATGGATCCACGGAGGCTCTCTGCTGGTTGGCTCCTCCACATCTCAGG
ATGGATCAGCACTGGCCGCGTACGGGGATGTGGTAGTTGTCACTGTCCAGTATCGCCTTGGGATCTTTGG
CTTCCTCAGCACTGGAGACAAGCACATGCCAGGCAACAGGGGATTCCTGGATGTGGTGGCTGCTCTTCGC
TGGGTCCAGGGGAACATAGCCCCCTTTGGGGGTGATCCCAACTGTGTCACTATCTTCGGTAACTCTGCTG
GAGGCATGATTGTCTCATCCCTGTTCCTGTCTCCAATATCTGCTGGGCTCTTCCACAGAGCCATATCCCA
GAGTGGGATTGTCACGACCATTATGATGGAAGACATGAAACCATGGCCTGAAGCTCAGAACTTTGCCAAT
TCTGTGGCCTGTGGCTCTGCATCCCCAGCTGAGCTGGTCCAGTGTTTGCTGCAGAAGGAAGGAAAGGACC
TTATCAAGCAGAAAAACGTGAACATTTCCTACATAGTCAATGACTCCTTCTTCCCACAAAGGCCAGAGAA
GCTCCTAGCAGACCAGCAATTCCCCACTGTGCCCTACCTTTTGGGAGTCACCAACCATGAATTTGGCTGG
CTTCTACTCAAATCCTTGAATATCCTGGATAAGTTGGAACATCTGAGCCGGGAAGACCTGTTGGAGATTT
CACGGCCCTTCTTGGCCATTATGGAAGTGCCCCCTGAGATCATGCCCACTGTCATCGATGAATACCTAGA
CAATGGCTCAGATCAATCAGCTACAAGGTATGCCTTCCAGGAATTGCTGGGTGATATCTCGTTCATCATT
CCTACCTTGAACTTCTCAAAATACCTTCGAGCCTTCCCAGAGGCCACAGAGGAAGAGAAGCAGCTGAGCC
TGACCATGATGGCCCAATGGAGCCAGTTTGCACGCACAGGAAACCCCAATGGCAAGGGGCTGCCTCCTTG
GCCCCAATTAAACCAGTTAGAACAATACTTGGAGATTGGTCTAGAATCACGGACTGGGGTGAAGCTAAAG
AAGGGTCGGCTACAGTTCTGGACAGAGACACTGCCAAGAAAAATTCAAGAATGGCACCGAGAGCAGAGAA
GCAGGAAAGTTCCAGAGGAGCTCTGA

Translation (521 aa):
MTNMRTMIPAGSSVLVWVTCLLLAFVTTVTGPKVIQPEVDTPLGRVRGRQVGVKDTDRMVNVFLGIPFAQ
APVGPLRFSAPLPPQPWEGVRDASINPPMCLQDVEKMINSRFGLNEKIKIFPISEDCLTLNIYSPTEITA
GDKRPVMVWIHGGSLLVGSSTSQDGSALAAYGDVVVVTVQYRLGIFGFLSTGDKHMPGNRGFLDVVAALR
WVQGNIAPFGGDPNCVTIFGNSAGGMIVSSLFLSPISAGLFHRAISQSGIVTTIMMEDMKPWPEAQNFAN
SVACGSASPAELVQCLLQKEGKDLIKQKNVNISYIVNDSFFPQRPEKLLADQQFPTVPYLLGVTNHEFGW
LLLKSLNILDKLEHLSREDLLEISRPFLAIMEVPPEIMPTVIDEYLDNGSDQSATRYAFQELLGDISFII
PTLNFSKYLRAFPEATEEEKQLSLTMMAQWSQFARTGNPNGKGLPPWPQLNQLEQYLEIGLESRTGVKLK
KGRLQFWTETLPRKIQEWHREQRSRKVPEEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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