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Report for CCDS52647.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52647.1 Public Mus musculus 8 Bean1 23 108 98 CCDS HistoryNCBI Gene:65115Re-query CCDS DB by CCDS ID:52647.1Re-query CCDS DB by GeneID:65115See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52647.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000164076.2 ENSMUSP00000132056.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000164076.2Link to Ensembl Protein Viewer:ENSMUSP00000132056.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000164076Re-query CCDS DB by Protein ID:ENSMUSP00000132056
Original member NCBI NM_001141925.1 NP_001135397.1 Updated not alive Link to Nucleotide Sequence:NM_001141925.1Link to Protein Sequence:NP_001135397.1Re-query CCDS DB by Nucleotide ID:NM_001141925Re-query CCDS DB by Protein ID:NP_001135397
Current member NCBI NM_001141925.2 NP_001135397.1 Accepted alive Link to Nucleotide Sequence:NM_001141925.2Link to Protein Sequence:NP_001135397.1Re-query CCDS DB by Nucleotide ID:NM_001141925Re-query CCDS DB by Protein ID:NP_001135397Link to BLAST:NP_001135397.1

Chromosomal Locations for CCDS 52647.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 104213933 104214026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104215014 104215164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104216928 104217267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (585 nt):
ATGAGAGCAGGACCCGTGTGTGGTCCACCCCACCTGCAGCCCAGAGGAGGTTTTTCAGAGGCTATGGAAG
GACTGACCTTCACGAGTCTTTGTGCATCTGGAGGACACACACACAGCCGTTCTAGCCCCAGGATGCCCTA
TGCCTGCAGCCCTGCTGAGGACTGGCCACCGCCCTTGGACGTCAGCTCCGAGGGGGATGTGGATGTCACA
GTGCTCTGGGAGCTGTACCCAGATTCTCCACCAGGCTATGAGGAATGCATGGGACCAGGGGCCACTCAGC
TGTATGTCCCCACGGATGCACCACCGCCCTACTCCATGACTGACTCCTGTCCCAGGCTGAATGGCGCCCT
TGACTCAGACAGCGGCCAGAGCCGCAGCCACCGTCAGCAAGAGCAGAGGACCCAGGGTCAGAGCAGACTC
CACACTGTCTCCATGGACACACTGCCACCTTATGAAGCTGTGTGTGGGACAGGCTCTCCATCTGACCTGC
TGCCATTGCCAGGACCAGAACCATGGCCAAGTAACTCCCAGGGCTCACCCATCCCAACCCAGGCTCCGAT
GCCCAGCCCTGAAAGGATTGTGTGA

Translation (194 aa):
MRAGPVCGPPHLQPRGGFSEAMEGLTFTSLCASGGHTHSRSSPRMPYACSPAEDWPPPLDVSSEGDVDVT
VLWELYPDSPPGYEECMGPGATQLYVPTDAPPPYSMTDSCPRLNGALDSDSGQSRSHRQQEQRTQGQSRL
HTVSMDTLPPYEAVCGTGSPSDLLPLPGPEPWPSNSQGSPIPTQAPMPSPERIV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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