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Report for CCDS52645.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52645.1 Public Mus musculus 8 Bean1 23 108 98 CCDS HistoryNCBI Gene:65115Re-query CCDS DB by CCDS ID:52645.1Re-query CCDS DB by GeneID:65115See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52645.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000171018.7 ENSMUSP00000129403.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000171018.7Link to Ensembl Protein Viewer:ENSMUSP00000129403.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000171018Re-query CCDS DB by Protein ID:ENSMUSP00000129403
Original member Current member EBI ENSMUST00000212979.1 ENSMUSP00000148571.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000212979.1Link to Ensembl Protein Viewer:ENSMUSP00000148571.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000212979Re-query CCDS DB by Protein ID:ENSMUSP00000148571
Original member NCBI NM_001141922.1 NP_001135394.1 Updated not alive Link to Nucleotide Sequence:NM_001141922.1Link to Protein Sequence:NP_001135394.1Re-query CCDS DB by Nucleotide ID:NM_001141922Re-query CCDS DB by Protein ID:NP_001135394
Current member NCBI NM_001141922.2 NP_001135394.1 Accepted alive Link to Nucleotide Sequence:NM_001141922.2Link to Protein Sequence:NP_001135394.1Re-query CCDS DB by Nucleotide ID:NM_001141922Re-query CCDS DB by Protein ID:NP_001135394Link to BLAST:NP_001135394.1

Chromosomal Locations for CCDS 52645.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 104181731 104181748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104182011 104182119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104210918 104211169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104213916 104214026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104215014 104215164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104216928 104217267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (981 nt):
ATGGAAGACGTGGAAACAGCGAGTAGAGGGGCCTCCCCCCTCCAAGAAGTCAGAGCTGTGCTCGTGGGCA
GGCTGGCTCCGCTGTTCTGCTCCAAGGATTACATGTCCTTCAAACGCCCTTGCCCCTTAGCACGATACAA
CCGTACCAGCTATTTCTACCCTACCACGTTCTCCGAGAGCTCTGAGCACAGCCACCTGCTGGTGTCTCCG
GTGCTGGTGGCGAGCGCTGTCATAGGTGTGGTCATCACTCTCTCCTGCATCACCATCATTGTGGGAAGCA
TCAGAAGGGACAGACAGGCCCGGATCCAGCGACACCACCATCGTCACCGCCGCCATCATCACCATCACCG
CCACCGCAGGCGCCGACACCGAGAATACGTCGCAGGGGTGACATCCATGAGAGCAGGACCCGTGTGTGGT
CCACCCCACCTGCAGCCCAGAGGAGGTTTTTCAGAGGCTATGGAAGGACTGACCTTCACGAGTCTTTGTG
CATCTGGAGGACACACACACAGCCGTTCTAGCCCCAGGATGCCCTATGCCTGCAGCCCTGCTGAGGACTG
GCCACCGCCCTTGGACGTCAGCTCCGAGGGGGATGTGGATGTCACAGTGCTCTGGGAGCTGTACCCAGAT
TCTCCACCAGGCTATGAGGAATGCATGGGACCAGGGGCCACTCAGCTGTATGTCCCCACGGATGCACCAC
CGCCCTACTCCATGACTGACTCCTGTCCCAGGCTGAATGGCGCCCTTGACTCAGACAGCGGCCAGAGCCG
CAGCCACCGTCAGCAAGAGCAGAGGACCCAGGGTCAGAGCAGACTCCACACTGTCTCCATGGACACACTG
CCACCTTATGAAGCTGTGTGTGGGACAGGCTCTCCATCTGACCTGCTGCCATTGCCAGGACCAGAACCAT
GGCCAAGTAACTCCCAGGGCTCACCCATCCCAACCCAGGCTCCGATGCCCAGCCCTGAAAGGATTGTGTG
A

Translation (326 aa):
MEDVETASRGASPLQEVRAVLVGRLAPLFCSKDYMSFKRPCPLARYNRTSYFYPTTFSESSEHSHLLVSP
VLVASAVIGVVITLSCITIIVGSIRRDRQARIQRHHHRHRRHHHHHRHRRRRHREYVAGVTSMRAGPVCG
PPHLQPRGGFSEAMEGLTFTSLCASGGHTHSRSSPRMPYACSPAEDWPPPLDVSSEGDVDVTVLWELYPD
SPPGYEECMGPGATQLYVPTDAPPPYSMTDSCPRLNGALDSDSGQSRSHRQQEQRTQGQSRLHTVSMDTL
PPYEAVCGTGSPSDLLPLPGPEPWPSNSQGSPIPTQAPMPSPERIV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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