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Report for CCDS52598.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52598.1 Public Mus musculus 8 Sin3b 23 108 98 CCDS HistoryNCBI Gene:20467Re-query CCDS DB by CCDS ID:52598.1Re-query CCDS DB by GeneID:20467See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52598.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000109950.4 ENSMUSP00000105576.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109950.4Link to Ensembl Protein Viewer:ENSMUSP00000105576.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000109950Re-query CCDS DB by Protein ID:ENSMUSP00000105576
Original member Current member NCBI NM_001113248.2 NP_001106719.1 Accepted alive Link to Nucleotide Sequence:NM_001113248.2Link to Protein Sequence:NP_001106719.1Re-query CCDS DB by Nucleotide ID:NM_001113248Re-query CCDS DB by Protein ID:NP_001106719Link to BLAST:NP_001106719.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001106719.1 293 Q62141-2 293 100% 0 0

Chromosomal Locations for CCDS 52598.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 72723310 72723408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 72724044 72724150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 72725537 72725690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 72731081 72731278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 72733345 72733488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 72739369 72739488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 72739730 72739789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (882 nt):
ATGGCGCATGCAGGCAGCGGAGGCTCCGCGGGCCGGGGATTCGGTGGCTCCCGCTGGGGTCGTTCGGGCT
CCGGAGGGCACGAGAAGCTGCCGGTGCACGTGGAGGACGCTCTCACCTACCTCGACCAGGTGAAGATCCG
CTTTGGCAGTGACCCTGCCACCTACAACGGCTTCCTGGAGATCATGAAGGAGTTCAAAAGCCAGAGCATC
GACACTCCTGGTGTGATCAGGCGTGTGTCCCAGCTCTTCCATGAGCACCCTGACCTCATCGTGGGGTTTA
ATGCTTTCCTTCCGCTTGGATACCGTATAGACATTCCCAAGAACGGCAAGCTGAACATCCAGTCGCCGCT
GAGCAGCCAGGACAACTCCCATAGCCATGGTGACTGTGGGGAGGACTTCAAGCAGATGTCCTACAAGGAG
GACAGAGGCCAGGTGCCCCTGGAGTCTGACTCTGTGGAGTTCAACAATGCTATCAGCTATGTGAACAAGA
TCAAGACCCGCTTTCTGGACCACCCTGAGATCTACAGGTCCTTCCTGGAGATCCTACACACCTACCAGAA
GGAACAGCTGCACACTAAGGGCCGTCCATTCCGTGGCATGTCTGAGGAGGAGGTTTTCACAGAGGTGGCC
AATCTTTTCCGTGGTCAGGAGGACCTGCTGTCAGAGTTCGGACAGTTCCTGCCTGAGGCAAAGCGGTCCC
TGTTTACAGGCAATGGGTCGTGCGAGATGAACAGTGGGCAGAAGAATGAGGAGAAGAGTCTGGAACACAA
CAAGAAACGCTCTCGGCCTTCACTCCTGCGCCCTGTGTCTGCGCCAGCCAAGGTGGGGCTGCAGTTGAAA
TGTGCAGTTGTGTGGTTTGGTTACTGCACAGCTGAGGAGTGA

Translation (293 aa):
MAHAGSGGSAGRGFGGSRWGRSGSGGHEKLPVHVEDALTYLDQVKIRFGSDPATYNGFLEIMKEFKSQSI
DTPGVIRRVSQLFHEHPDLIVGFNAFLPLGYRIDIPKNGKLNIQSPLSSQDNSHSHGDCGEDFKQMSYKE
DRGQVPLESDSVEFNNAISYVNKIKTRFLDHPEIYRSFLEILHTYQKEQLHTKGRPFRGMSEEEVFTEVA
NLFRGQEDLLSEFGQFLPEAKRSLFTGNGSCEMNSGQKNEEKSLEHNKKRSRPSLLRPVSAPAKVGLQLK
CAVVWFGYCTAEE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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