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Report for CCDS5255.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5255.1 Public Homo sapiens 6 SERAC1 24 110 108 CCDS HistoryNCBI Gene:84947Re-query CCDS DB by CCDS ID:5255.1Re-query CCDS DB by GeneID:84947See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5255.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000647468.2 ENSP00000496731.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000647468.2Link to Ensembl Protein Viewer:ENSP00000496731.1Re-query CCDS DB by Nucleotide ID:ENST00000647468Re-query CCDS DB by Protein ID:ENSP00000496731
Original member Current member NCBI NM_032861.4 NP_116250.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032861.4Link to Protein Sequence:NP_116250.3Re-query CCDS DB by Nucleotide ID:NM_032861Re-query CCDS DB by Protein ID:NP_116250Link to BLAST:NP_116250.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_116250.3 654 Q96JX3-1 654 100% 0 0

Chromosomal Locations for CCDS 5255.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 158111366 158111502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 158113449 158113592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 158114789 158114971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 158116185 158116282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 158117727 158117821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 158119029 158119170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 158120425 158120575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 158128108 158128270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 158130373 158130486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 158143056 158143184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 158144299 158144420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 158146782 158146913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 158148865 158148954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 158150453 158150589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 158155315 158155351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 158158273 158158363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1965 nt):
ATGTCCCTGGCTGCTTATTGCGTCATCTGTTGCAGAAGAATAGGAACCTCTACTTCCCCACCAAAAAGTG
GCACACACTGGAGAGATATCAGAAATATAATAAAGTTTACTGGATCACTTATTTTAGGAGGTTCTTTATT
TCTTACATATGAAGTTCTGGCCCTGAAGAAGGCTGTGACATTAGATACTCAAGTGGTAGAACGAGAAAAA
ATGAAGTCATATATATATGTGCACACAGTTTCTTTAGACAAAGGAGAAAATCATGGTATTGCCTGGCAGG
CAAGAAAAGAACTTCACAAAGCAGTAAGAAAAGTATTGGCAACATCAGCCAAGATACTGCGGAATCCATT
TGCTGATCCTTTTAGTACAGTTGATATAGAAGATCATGAGTGTGCTGTGTGGCTGCTCCTACGGAAGAGC
AAGTCAGATGACAAAACCACGCGACTCGAGGCTGTGCGGGAAATGTCGGAGACCCATCACTGGCATGATT
ACCAGTATAGGATAATTGCTCAAGCCTGTGATCCGAAAACTCTTATTGGTTTGGCACGAAGCGAAGAGAG
TGATCTTCGCTTTTTTCTCCTACCACCTCCTTTGCCATCTTTAAAAGAAGATTCTTCCACTGAAGAAGAG
CTCAGACAGTTGCTGGCTTCCTTACCTCAAACAGAGCTAGATGAGTGTATCCAGTATTTTACATCTTTGG
CTCTTAGTGAAAGCAGTCAGAGTCTAGCTGCTCAGAAGGGTGGTTTATGGTGTTTTGGAGGAAATGGACT
TCCTTATGCTGAAAGTTTTGGAGAAGTTCCTTCAGCAACAGTGGAAATGTTCTGTTTAGAAGCTATAGTA
AAACATTCTGAGATATCCACACATTGTGATAAAATCGAAGCAAATGGAGGCCTGCAGCTACTTCAGAGGC
TGTACCGACTTCACAAGGACTGCCCTAAAGTACAGAGAAATATAATGCGTGTCATTGGAAATATGGCTTT
GAATGAACATCTTCATTCTTCTATAGTTCGCTCAGGCTGGGTTTCCATCATGGCAGAAGCAATGAAATCT
CCCCACATTATGGAGTCCTCACACGCTGCCAGAATCCTGGCAAATCTAGACCGAGAAACTGTGCAAGAAA
AATATCAGGATGGCGTATATGTGCTGCATCCCCAATATCGAACAAGTCAGCCCATTAAAGCAGATGTCCT
TTTTATTCATGGCCTTATGGGAGCAGCATTCAAAACATGGCGCCAGCAGGACAGTGAGCAGGCTGTAATT
GAAAAACCTATGGAGGATGAAGACAGATATACGACGTGCTGGCCCAAGACATGGTTAGCAAAAGACTGTC
CTGCTCTCCGAATTATATCTGTGGAGTATGACACCAGCCTCAGCGACTGGAGAGCAAGGTGCCCTATGGA
AAGAAAGTCCATTGCATTCAGAAGCAACGAACTTCTTAGGAAGCTCAGAGCTGCTGGTGTTGGGGATAGG
CCAGTGGTTTGGATATCACATAGCATGGGAGGTCTTCTTGTCAAAAAGATGCTGTTGGAAGCCTCTACGA
AGCCAGAAATGAGTACTGTTATCAACAATACCAGAGGAATAATTTTTTATAGTGTCCCTCATCATGGATC
ACGTTTGGCTGAATACTCTGTTAATATTCGCTATCTTCTCTTCCCCTCGTTGGAAGTCAAAGAACTCAGC
AAGGATTCTCCTGCACTTAAAACACTACAAGATGACTTTCTGGAGTTTGCTAAAGACAAAAACTTCCAGG
TGCTGAATTTTGTGGAAACACTACCAACCTACATTGGCAGCATGATTAAGCTCCATGTGGTACCTGTGGA
ATCAGCAGATTTAGGCATTGGAGATCTAATTCCTGTGGATGTTAACCATTTGAACATTTGTAAGCCAAAG
AAAAAGGATGCTTTTTTGTACCAGCGTACTTTACAATTCATTCGTGAAGCTTTAGCCAAAGACCTTGAAA
ACTAA

Translation (654 aa):
MSLAAYCVICCRRIGTSTSPPKSGTHWRDIRNIIKFTGSLILGGSLFLTYEVLALKKAVTLDTQVVEREK
MKSYIYVHTVSLDKGENHGIAWQARKELHKAVRKVLATSAKILRNPFADPFSTVDIEDHECAVWLLLRKS
KSDDKTTRLEAVREMSETHHWHDYQYRIIAQACDPKTLIGLARSEESDLRFFLLPPPLPSLKEDSSTEEE
LRQLLASLPQTELDECIQYFTSLALSESSQSLAAQKGGLWCFGGNGLPYAESFGEVPSATVEMFCLEAIV
KHSEISTHCDKIEANGGLQLLQRLYRLHKDCPKVQRNIMRVIGNMALNEHLHSSIVRSGWVSIMAEAMKS
PHIMESSHAARILANLDRETVQEKYQDGVYVLHPQYRTSQPIKADVLFIHGLMGAAFKTWRQQDSEQAVI
EKPMEDEDRYTTCWPKTWLAKDCPALRIISVEYDTSLSDWRARCPMERKSIAFRSNELLRKLRAAGVGDR
PVVWISHSMGGLLVKKMLLEASTKPEMSTVINNTRGIIFYSVPHHGSRLAEYSVNIRYLLFPSLEVKELS
KDSPALKTLQDDFLEFAKDKNFQVLNFVETLPTYIGSMIKLHVVPVESADLGIGDLIPVDVNHLNICKPK
KKDAFLYQRTLQFIREALAKDLEN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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