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Report for CCDS52493.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52493.1 Public Mus musculus 8 Kbtbd11 23 108 98 CCDS HistoryNCBI Gene:74901Re-query CCDS DB by CCDS ID:52493.1Re-query CCDS DB by GeneID:74901See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52493.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000069399.6 ENSMUSP00000068321.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000069399.6Link to Ensembl Protein Viewer:ENSMUSP00000068321.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000069399Re-query CCDS DB by Protein ID:ENSMUSP00000068321
Original member Current member EBI ENSMUST00000183471.1 ENSMUSP00000139292.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000183471.1Link to Ensembl Protein Viewer:ENSMUSP00000139292.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000183471Re-query CCDS DB by Protein ID:ENSMUSP00000139292
Original member Current member NCBI NM_029116.2 NP_083392.1 Accepted alive Link to Nucleotide Sequence:NM_029116.2Link to Protein Sequence:NP_083392.1Re-query CCDS DB by Nucleotide ID:NM_029116Re-query CCDS DB by Protein ID:NP_083392Link to BLAST:NP_083392.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083392.1 633 Q8BNW9 633 100% 0 0

Chromosomal Locations for CCDS 52493.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 15027403 15029304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1902 nt):
ATGGAGAACTCGGTGGCGCCTTTCGTCCTCTACTCGGGGACTGAGCCTAGGACTCCTGGAGAGGACAGCC
TCCCTCTGCCAGCCGAGGAAGAGGGCGCTGCGTCCACAGCGCAGACACCCTGCAGTCTCAGCGCCTCATT
GTGCTTCAGCTCCGGGGACGACTCCCCGCCGCAGTCTCGCGCCTCTGCCGCGGAGGGCTCCGAAGCCTCT
CCGCCTTCTCTCCGCAGCGACCTGCGTGTGGTGGAGACGCAGTGGGATGTCAGCAGCGCCGCGTCCCCAG
AGTCCCCGGAGGAGTGCGCGCGCCCGGAAGAGCCCGCGTCGCCGGAGGATCCCCCTTCCCGACACGAGCA
CGCGCGTCCCGTGGAACTCGAGTCTTTGGACGAGCTTGGGGAGCCCGTGCCTGTGCCGCCCGGGGTCGGG
TCGGTGCACGGAGAACCCGACCTGGTCATCGAGGTGGCCGGTCGCCGACTACGGGCGCATAAGGCGGTGC
TGGCCGCACGCAGCGACTACTTCCGCGCGCGCGCATCCCGGGACGTGCTGCGGGTGCAAGGCGTGAGCTT
CACTGCCCTGCGGCTACTGCTGGCCGACGCATACAGCGGGCGCATGGCGGGCGTGCGGCCCGACAACGTG
GCCGAGGTGGTGGCCGGCGCGCGCCGCCTCCAGCTGCCCGGCGCTGCGCAGCGCGCCACCGAGGCCATGG
CGCCGCAGCTGAGCCTGGACAACTGCTACGAGGTGCTGAGCGCAGGCAAGCGGCAGCGGCTGACCGAGCT
GCGCGACGCCGCCTACCGCTTCATGAGCGACCACTACCTGGAGGTGCTGCGCGAGCCCGCCGTATTCGGC
CGCCTGTCCGGTGCAGAACGCGATCTGCTGCTGCGGCGCCGCCTGTGTACCGGCCGCGCTTGTCTGCTGG
CCGCTGCGCTCGGGACAACCGGGGAGCGCTCTGGCAGTCGACCGCAGAGCCCGTCCGGGGACGCAGAGTC
GCGCGGGGACGCGGCCGTTTATTGCTACCAGGCGGAGGCCGGGGAGTGGCGCGAGCTGACCCGGCTGCCC
GAGGGCGCGCCAGCGCGCGGCTGCGGCCTCTGCGTGCTCTTCAACTACCTCTTCCTGGCGGGCGGTGTGG
CTCCTGCGGGTCCCGATGGCCGCGCGCGCCCGTCGGACCAGGTGTATTGCTACAACCCGGTCACCGACTC
CTGGAGTACTGTGCGGCCGCTGCGCCAGGCACGCTCGCAGGTGCAGCTGCTGGCCCTGGACGGCCACCTG
TATGCCGTGGGTGGCGAGTGCCTGCTCAGCGTGGAGCGCTACGACCCGCGAGCTGACCGATGGACGGCGG
TGGCCCCGCTTCCCCGTGGCGCCTTCGCAGTGGCCCACGAGGCTGCCACCTGTAACGGAGAGATTTATGT
GTCCGGGGGCTCACTCTTCTACCGCCTGCTCAAGTACGACCCCCGGCGCGACGAGTGGCAGGAGTGCCCA
TGCAGCAGCAGCCGAGAGCGCTCTGCCGACATGGTGGCCCTCGACGGCTTCCTCTATCGCTTTGACCTGT
GTGGGAGCCGTGGGGAAGCTCAGGCTGCAGTCGGTTCAGGTGGCGGGGTCAGCGTTTTCCGCTACCATTG
CCTGGCCAAGCAATGGAGCCAATGTGCTGTACACCTGAGGCCCCCTGGCGCACCCGCAGGCCTCCAGCCC
TTTCGTTGTGTTGCCCTGGATGGTACCATCTACTGTGTGAGCCGCGCCGGGACCTGGCGTTTCGTGCCTT
CTCAGGACACCGAGGCTGGCAGCGATATGGGACCTGGTGGCAGCTTTGAGCCCGAGCCCCTGGGATCCCC
CCTGGATGTCCGGGGCGTACTCTTTCCATTTGTACTCAACCTGCCTGAGAAGCCGGACCGCGGGGAGCAG
GGTGCAGTCTAG

Translation (633 aa):
MENSVAPFVLYSGTEPRTPGEDSLPLPAEEEGAASTAQTPCSLSASLCFSSGDDSPPQSRASAAEGSEAS
PPSLRSDLRVVETQWDVSSAASPESPEECARPEEPASPEDPPSRHEHARPVELESLDELGEPVPVPPGVG
SVHGEPDLVIEVAGRRLRAHKAVLAARSDYFRARASRDVLRVQGVSFTALRLLLADAYSGRMAGVRPDNV
AEVVAGARRLQLPGAAQRATEAMAPQLSLDNCYEVLSAGKRQRLTELRDAAYRFMSDHYLEVLREPAVFG
RLSGAERDLLLRRRLCTGRACLLAAALGTTGERSGSRPQSPSGDAESRGDAAVYCYQAEAGEWRELTRLP
EGAPARGCGLCVLFNYLFLAGGVAPAGPDGRARPSDQVYCYNPVTDSWSTVRPLRQARSQVQLLALDGHL
YAVGGECLLSVERYDPRADRWTAVAPLPRGAFAVAHEAATCNGEIYVSGGSLFYRLLKYDPRRDEWQECP
CSSSRERSADMVALDGFLYRFDLCGSRGEAQAAVGSGGGVSVFRYHCLAKQWSQCAVHLRPPGAPAGLQP
FRCVALDGTIYCVSRAGTWRFVPSQDTEAGSDMGPGGSFEPEPLGSPLDVRGVLFPFVLNLPEKPDRGEQ
GAV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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