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Report for CCDS52472.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52472.1 Public Mus musculus 8 Cd209f 23 108 98 CCDS HistoryNCBI Gene:69142Re-query CCDS DB by CCDS ID:52472.1Re-query CCDS DB by GeneID:69142See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52472.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000145007.7 ENSMUSP00000116355.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000145007.7Link to Ensembl Protein Viewer:ENSMUSP00000116355.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000145007Re-query CCDS DB by Protein ID:ENSMUSP00000116355
Original member Current member NCBI NM_026956.2 NP_081232.2 Accepted alive Link to Nucleotide Sequence:NM_026956.2Link to Protein Sequence:NP_081232.2Re-query CCDS DB by Nucleotide ID:NM_026956Re-query CCDS DB by Protein ID:NP_081232Link to BLAST:NP_081232.2

Chromosomal Locations for CCDS 52472.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 4103108 4103249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 4103622 4103734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 4104102 4104253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 4104485 4104571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 4104823 4104891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 4105271 4105354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 4105466 4105546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 4105699 4105738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (768 nt):
ATGGCAGGAGAGCCAGAGTTCCATCAGTCAAAGAATCATGAGGAGGAGGTCACATCTGGAGAGCAGGGAT
TTGCTGAGCATGACCCCGAGGGTCTCATTTGCAGCTCCAAGAGTTTACAAGGGCATCTGACCCAAGTCCC
CTGGCTTCTGCTGCTTCTCATCTCTTTGGGCCTCTTTTTGCTTATGTTGGCCACCCTGGTTCAAGTCTCC
AGGATTCGTGCATACTCACAGGGACAGACCCAGGATCAGCAGGGTAGCTCCAGCTTGGACAAGGTTGCCG
TTCCTCGGGAGCAGACACACTCCGGCTTGGAGCAGATCCAGCAGATTCAGCAGCAGCTGACTCAGTTCAA
CGCCTCGCTGGCTGGCCTGTGCCGGCCCTGTCCCTGGGACTGGGAGCTCTTCCAGGGAAGCTGCTACCTC
TTCTCCAGAACCCTGGGCAGCTGGGAAACCTCTGCCTCCTCCTGCGAGGATCTCGGGGCCCACCTGGTGA
TTGTCAACAGTGTTTCAGAGCAGAGATTCATGAAATATTGGAATGTGAGGAAAAACCAACGCTCCTGGAT
CGGCCTCAGTGACCATATACATGAAGGTTCCTGGCAGTGGGTGGACGGCAGCGCCCTCAAGTTCAGCTTT
TGGAAAGAGGGGGAACCTAACAATGACGGAGATGAGGACTGCGTGGAGCTGTTCATGGATGATTGGAATG
ATAATAAGTGCACTGAACAGAACTTTTGGGTCTGTGAGCAGCCCTCTGCTCCCTGCCCTCATCACTGA

Translation (255 aa):
MAGEPEFHQSKNHEEEVTSGEQGFAEHDPEGLICSSKSLQGHLTQVPWLLLLLISLGLFLLMLATLVQVS
RIRAYSQGQTQDQQGSSSLDKVAVPREQTHSGLEQIQQIQQQLTQFNASLAGLCRPCPWDWELFQGSCYL
FSRTLGSWETSASSCEDLGAHLVIVNSVSEQRFMKYWNVRKNQRSWIGLSDHIHEGSWQWVDGSALKFSF
WKEGEPNNDGDEDCVELFMDDWNDNKCTEQNFWVCEQPSAPCPHH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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