NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS52470.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52470.1 Public Mus musculus 8 Pcp2 23 108 98 CCDS HistoryNCBI Gene:18545Re-query CCDS DB by CCDS ID:52470.1Re-query CCDS DB by GeneID:18545See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52470.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000133459.7 ENSMUSP00000122902.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000133459.7Link to Ensembl Protein Viewer:ENSMUSP00000122902.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000133459Re-query CCDS DB by Protein ID:ENSMUSP00000122902
Original member NCBI NM_001129804.1 NP_001123276.1 Updated not alive Link to Nucleotide Sequence:NM_001129804.1Link to Protein Sequence:NP_001123276.1Re-query CCDS DB by Nucleotide ID:NM_001129804Re-query CCDS DB by Protein ID:NP_001123276
Current member NCBI NM_001129804.2 NP_001123276.1 Accepted alive Link to Nucleotide Sequence:NM_001129804.2Link to Protein Sequence:NP_001123276.1Re-query CCDS DB by Nucleotide ID:NM_001129804Re-query CCDS DB by Protein ID:NP_001123276Link to BLAST:NP_001123276.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001123276.1 120 P12660 120 100% 0 0

Chromosomal Locations for CCDS 52470.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 3623439 3623558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3624508 3624632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3624786 3624900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3625002 3625004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (363 nt):
ATGGCAGGTTCACCGGACCAGGAAGGCTTCTTCAACCTGCTGACCCACGTGCAGGGCGATCGGATGGAGG
AG
CAGCGCTGTTCCTTGCAGGCTGGGCCAGGCCAGAACCCAGAAAGCCAGGGTGGCCCTGCTCCAGAGAT
G
GACAATCTCATGGATATGCTGGTCAACACCCAGGGCCGCCGCATGGACGACCAGCGTGTAACAGTTAAT
TCC
CTGCCTGGCTTCCAACCTATCGGCCCCAAGGATGGAATGCAGAAACGACCTGGGACCCTCAGCCCTC
AA
CCCCTGCTCACCCCTCAGGATCCTGCTGCACTCAGCTTCCGCAGGAACAGCAGCCCCCAGCCCCAGAC
A
CAAGCTCCTTGA


Translation (120 aa):
MAGSPDQEGFFNLLTHVQGDRMEEQRCSLQAGPGQNPESQGGPAPEMDNLMDMLVNTQGRRMDDQRVTVN
S
LPGFQPIGPK
DGMQKRPGTLSPQPLLTPQDPAALSFRRNSSPQPQTQAP



Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser