NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS52468.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52468.1 Public Mus musculus 8 Rps23rg1 23 108 98 CCDS HistoryNCBI Gene:546049Re-query CCDS DB by CCDS ID:52468.1Re-query CCDS DB by GeneID:546049See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 52468.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000136592.1 ENSMUSP00000123235.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000136592.1Link to Ensembl Protein Viewer:ENSMUSP00000123235.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000136592Re-query CCDS DB by Protein ID:ENSMUSP00000123235
Original member Current member EBI ENSMUST00000086479.6 ENSMUSP00000136628.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000086479.6Link to Ensembl Protein Viewer:ENSMUSP00000136628.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000086479Re-query CCDS DB by Protein ID:ENSMUSP00000136628
Original member Current member NCBI NM_001024728.2 NP_001019899.1 Accepted alive Link to Nucleotide Sequence:NM_001024728.2Link to Protein Sequence:NP_001019899.1Re-query CCDS DB by Nucleotide ID:NM_001024728Re-query CCDS DB by Protein ID:NP_001019899Link to BLAST:NP_001019899.1

Chromosomal Locations for CCDS 52468.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 3580469 3580474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3583835 3584254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (426 nt):
ATGCAGAGCCAACAGAGAAACATTGGCTACTTTAACCACCTTAAAGCGGACTCCAGGAATATCACCTACA
GC
ATGACCTTTTCGACGAAATCCAGCAACCAGAACTTCATCATTTTCCTCAATGAAGTTCAGGCAGCCAT
C
ATTGGGCACGAACGCTGTGATCTTCTTCCCGTTCTTAATGAGCTGCACCCTGACGCACTTCCTGATGGC
AGA
ATTTGGCTGTTTGGCCTCAACCCCTACTTTTTCCAGCACAATTCCCTTTGCATGAGAGGCACCCCCA
AA
CGGATTGGCCTTCAGGGCTGTGCCCAAGTGGGCTTTCTTGTACTGTTTGTCATGCCACTTCTGATCCC
G
TCGGTGACTGCGGAGCTTCCGGGCAGTTCGGAGACCACGACACTTGCCCATCTTGCCGGCGCCACGGGC
CCC
TAA


Translation (141 aa):
MQSQQRNIGYFNHLKADSRNITYSMTFSTKSSNQNFIIFLNEVQAAIIGHERCDLLPVLNELHPDALPDG
R
IWLFGLNPYFFQHNSLCMRGTPKRIGLQGCAQVGFLVLFVMPLLIPSVTAELPGSSETTTLAHLAGATG
P




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser